7mi4_ABCDEF : 3D-footprint complex

structure name	SYMMETRICAL PAM-PAM PRESPACER BOUND CAS4/CAS1/CAS2 COMPLEX
source	GEOBACTER SULFURREDUCENS
experiment	NMR
reference complex	7mi4_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7mi4_A interface= dgsiplipvrmlnehvycprlaylmwvqgefshneftvdgvirhrrvdagggvlpsetqedsriharsvslsserlgitakidlvegegayvspvdykrgkrphvaggayepervqlcaqglllrehgfasdggalyfvasrervpvafddeligrtlaaidemgrtalsgtmpppledspkcprcslvgiclpdevrflshlsveprpiipadgrglplyvqspkayvrkdgdclvieeervrvaearlgetsqvalfgnatlttaalheclrreipvtwlsyggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_B interface=11,12,47,70, grglplyvqsPKayvrkdgdclvieeervrvaearlgetsqvalfgNatlttaalheclrreipvtwlsYggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_C interface= dgsiplipvrMLnehvycprlaylmwvqgefshneftvdgvirhrrVdagggvlpsetqedsriharsvSlsserlgitakidlvegegayvspvdykrgkrphvaggayepervqlcaqglllrehgfasdggalyfvasrervpvafddeligrtlaaidemgrtalsgtmpppledspkcprcslvgiclpdevrflshlsveprpiipadgrglplyvqspkayvrkdgdclvieeervrvaearlgetsqvalfgnatlttaalheclrreipvtwlsyggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_D interface=11,12,47,70, grglplyvqsPKayvrkdgdclvieeervrvaearlgetsqvalfgNatlttaalheclrreipvtwlsYggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_E interface=14,17,18, mehlyivsydirnQrrWRrlfktmhgfgcwlqlsvfqcrldririikmeaaineivnhaedhvlildlgpaenvkpkvssigktfdpilrqaviv > 7mi4_F interface=14,17,18, mehlyivsydirnQrrWRrlfktmhgfgcwlqlsvfqcrldririikmeaaineivnhaedhvlildlgpaenvkpkvssigktfdpilrqaviv
interface signature	/PKNY/MLVS/PKNY/QWR/QWR

Estimated binding specificities ?

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# IC=7.356 IC/col=0.334 n_of_columns=22

specificity:

A |   0  24  24  24  24  13  24  24  96  24  24  24  24   0  13  50   0  24  24  24  24   0
C |  96  24  24  24  24  57  24  24   0  24  24  24  24   0  57  13   0  24  24  24  24   0
G |   0  24  24  24  24  13  24  24   0  24  24  24  24   0  13  13  96  24  24  24  24  96
T |   0  24  24  24  24  13  24  24   0  24  24  24  24  96  13  20   0  24  24  24  24   0

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updated Sun Dec 15 08:41:46 2024