7mi4_ABCDEF : 3D-footprint complex

structure name	SYMMETRICAL PAM-PAM PRESPACER BOUND CAS4/CAS1/CAS2 COMPLEX
source	GEOBACTER SULFURREDUCENS
experiment	NMR
reference complex	7mi4_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7mi4_A interface= dgsiplipvrmlnehvycprlaylmwvqgefshneftvdgvirhrrvdagggvlpsetqedsriharsvslsserlgitakidlvegegayvspvdykrgkrphvaggayepervqlcaqglllrehgfasdggalyfvasrervpvafddeligrtlaaidemgrtalsgtmpppledspkcprcslvgiclpdevrflshlsveprpiipadgrglplyvqspkayvrkdgdclvieeervrvaearlgetsqvalfgnatlttaalheclrreipvtwlsyggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_B interface=11,12,47,70, grglplyvqsPKayvrkdgdclvieeervrvaearlgetsqvalfgNatlttaalheclrreipvtwlsYggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_C interface= dgsiplipvrMLnehvycprlaylmwvqgefshneftvdgvirhrrVdagggvlpsetqedsriharsvSlsserlgitakidlvegegayvspvdykrgkrphvaggayepervqlcaqglllrehgfasdggalyfvasrervpvafddeligrtlaaidemgrtalsgtmpppledspkcprcslvgiclpdevrflshlsveprpiipadgrglplyvqspkayvrkdgdclvieeervrvaearlgetsqvalfgnatlttaalheclrreipvtwlsyggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_D interface=11,12,47,70, grglplyvqsPKayvrkdgdclvieeervrvaearlgetsqvalfgNatlttaalheclrreipvtwlsYggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mi4_E interface=14,17,18, mehlyivsydirnQrrWRrlfktmhgfgcwlqlsvfqcrldririikmeaaineivnhaedhvlildlgpaenvkpkvssigktfdpilrqaviv > 7mi4_F interface=14,17,18, mehlyivsydirnQrrWRrlfktmhgfgcwlqlsvfqcrldririikmeaaineivnhaedhvlildlgpaenvkpkvssigktfdpilrqaviv
interface signature	/PKNY/MLVS/PKNY/QWR/QWR

Estimated binding specificities ?

readout + contact

# IC=7.338 IC/col=0.334 n_of_columns=22

specificity:

A |   0  24  24  24  24   0  12  18  96  24  24  24  24   0  24  24  18  24  24  24  24   0
C |  96  24  24  24  24  96   6   6   0  24  24  24  24   0  24  24  18  24  24  24  24   0
G |   0  24  24  24  24   0  18  54   0  24  24  24  24   0  24  24  42  24  24  24  24  96
T |   0  24  24  24  24   0  60  18   0  24  24  24  24  96  24  24  18  24  24  24  24   0

scan!

home
updated Thu Jul 31 14:39:00 2025