7mid_ABCD : 3D-footprint complex

structure name	SUB-COMPLEX OF CAS4-CAS1-CAS2 BOUND PAM CONTAINING DNA
source	GEOBACTER SULFURREDUCENS
experiment	NMR
structural superfamily	TTP0101/SSO1404-like;
reference complex	7mi4_C 7mid_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7mid_A interface= dgsiplipvrmlnehvycprlaylmwvqgefshneftvdgvirhrrvdagggvlpsetqedsriharsvslsserlgitakidlvegegayvspvdykrgkrphvaggayepervqlcaqglllrehgfasdggalyfvasrervpvafddeligrtlaaidemgrtalsgtmpppledspkcprcslvgiclpdevrflshlsveprpiipadgrglplyvqspkayvrkdgdclvieeervrvaearlgetsqvalfgnatlttaalheclrreipvtwlsyggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mid_B interface=11,12,47,70, grglplyvqsPKayvrkdgdclvieeervrvaearlgetsqvalfgNatlttaalheclrreipvtwlsYggwfmghtvstghrnvetrtyqyqrsfdpetclnlarrwivakiancrtllrrnwrgegdeakappgllmslqddmrhamrapslevllgiegasagryfqhfsrmlrggdgegmgfdfttrnrrppkdpvnallsfayamltrewtvalaavgldpyrgfyhqprfgrpalaldmmepfrpliadstvlmainngeirtgdfvrsaggcnltdsarkrfiagferrmeqevthpifkytisyrrllevqarlltrylsgeipaypnfvt > 7mid_C interface=14,17,18, mehlyivsydirnQrrWRrlfktmhgfgcwlqlsvfqcrldririikmeaaineivnhaedhvlildlgpaenvkpkvssigktfdpilrqaviv > 7mid_D interface=14,17,18, mehlyivsydirnQrrWRrlfktmhgfgcwlqlsvfqcrldririikmeaaineivnhaedhvlildlgpaenvkpkvssigktfdpilrq
interface signature	/PKNY/QWR/QWR

Estimated binding specificities ?

readout + contact

# IC=7.861 IC/col=0.491 n_of_columns=16

specificity:

A |   0  12  24  24   0  16  24  96  24  24  24  24   0  16  60   0
C |  96  64  24  24   0  12  24   0  24  24  24  24   0  56   8   0
G |   0  12  24  24  96  12  24   0  24  24  24  24   0  12  12  96
T |   0   8  24  24   0  56  24   0  24  24  24  24  96  12  16   0

scan!

home
updated Sun Dec 15 08:46:49 2024