structure nameCRYO-EM STRUCTURE OF ESCHERICHIA COLI RNA POLYMERASE BOUND TO T7A1 PROMOTER DNA
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRSWDYRERRRRPKESLR/R/VRMMLENRLKYNRFFERYSTYTWRQTHERRIRER/DDLRLH

Estimated binding specificities ?

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# IC=27.613 IC/col=0.673 n_of_columns=41 specificity:   
A |   0   0   0   0  24  24  24   0   0  96  96   0   0  96   0   0   0   7  24  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  73  75   0  73
C |  96  96   0  96  24  24  24   0   0   0   0   0   0   0   0  96  96   9  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96   9   7   0   9
G |   0   0   0   0  24  24  24  96   0   0   0  96   0   0   0   0   0   7  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0   7   7   0   7
T |   0   0  96   0  24  24  24   0  96   0   0   0  96   0  96   0   0  73  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   7   7  96   7
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updated Sun Dec 15 09:03:09 2024