structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC2)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;
reference complex5oqj_M 5oqj_Q 5oqj_R 5oqj_U 5oqj_X 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDRR/KS/NVFLTNVFLVT/RVLVQNKLLSK/VRV/LKDLIVQQLLE/AEEGEESEADG

Estimated binding specificities ?

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# IC=12.348 IC/col=0.343 n_of_columns=36 specificity:   
A |   0  83   4  96   0  24  83  83  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   4   4  96   0
C |   0   4   4   0   0  24   4   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5   4   5   0  96
G |   0   4   5   0   0  24   5   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   8  84   4   0   0
T |  96   5  83   0  96  24   4   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  79   4  83   0   0
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updated Thu Jul 31 15:17:15 2025