structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC2)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;
reference complex5oqj_M 5oqj_Q 5oqj_R 5oqj_U 5oqj_X 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDRR/KS/NVFLTNVFLVT/RVLVQNKLLSK/VRV/LKDLIVQQLLE/AEEGEESEADG

Estimated binding specificities ?

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# IC=12.377 IC/col=0.344 n_of_columns=36 specificity:   
A |   0   0  83   5  80  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   0  24  96   0  83   4  83
C |   0   0   5  83   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   0  24   0   0   4   4   4
G |  96   0   4   4   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5   0  24   0   0   4   4   4
T |   0  96   4   4   8  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  83  96  24   0  96   5  84   5
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updated Sun Dec 15 09:18:07 2024