7n8n_B : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE (HISTONE H2B-H2A DOUBLET)
source	MELBOURNEVIRUS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7n8n_ABCD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7n8n_B interface=3,103, rkRdksvnfrlglrnmlaqihpdisvqtealselsniavflgkkishgavtllpegtktikssavllaagdlygkdlgrhavgemtkavtrygsakeskegsRsskaklqisvarserllrehggcsrvsegaavalaaaieyfmgevlelagnaardskkvrisvkhitlaiqndaalfavvgkgvfsgagvslisvpipr

  
  ----RA--                                    +1zla_C    
                               +--------------1 
  ----RG--                +----3              +8ox0_C    
                          !    ! 
  ----RARA             +--5    +--------------6a5l_g    
                       !  ! 
  ----RG--          +--6  +-------------------5x0y_G    
                    !  ! 
  ----RG--       +--9  +----------------------8jla_C    
                 !  ! 
  --RA----       !  +-------------------------6g0l_D    
                 !  
  RT------       !          +-------------------9fgq_D    
                 !      +---4 
  ----RGRG     -11      !   !           +-------8kcb_A    
                 !    +-7   +-----------2 
  ----RT--       !    ! !               +-------8hr1_E    
                 !  +-8 ! 
  ----RT--       !  ! ! +-----------------------8smw_G    
                 +-10 ! 
  ----RT--          ! +-------------------------8u14_G    
                    !  
  ----RG--          +--------------------------8txv_G

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updated Wed Dec 18 09:53:02 2024