7o72_7AMOQRUWX : 3D-footprint complex

structure name	YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CLOSED PROMOTER DNA
source	SACCHAROMYCES CEREVISIAE S288C
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7o72_7 interface=305,496,516, padfvpdsvsgmfrshdfsylrlrpdhasrplwispsdgriilesfsplaeqaqdflvtiaepisrpshiheykitayslyaavsvgletddiisvldrlskvpvaesiinfikgatisygkvklvikhnryfvettqadilqmllndsvigvhsfeianesvevvkkrcqeidypvleeydfrndhrnpdldidlkpstqirpyqekslskmfgngrarsgiivlpcgagktlvgitaactikksvivlctssvsvmqwrqqflqwctlqpencavftsdnkemfqtesglvvstysmvantrNrshdsqkvmdfltgrewgfiildevhvvpaamfrrvvstiaahaklgltatlvreddkigdlnfligpklyeanwmelsqkghianvqcaevwcpmtaefyqeylretarkrmllyimnptkfqacqfliqyherrgdkiivfsdnvyalqeyalkmgkpfiygstpqqermnilqnfqyndqintiflsKvgdtsidlpeatcliqissHygsrrqeaqrlgrilrakrrndegfnaffyslvskdtqemyystkrqaflvdqgyafkvithlhgmenipnlayasprerrellqevllknhplirkmy > 7o72_A interface=188, vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgswkkdEpelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfsllsfdqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtrhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmideeslvkym > 7o72_M interface= rgpnlnivltcpeckvyppkiverfsegdvvcalcglvlsdklvdtrvgeasnplldgnnlstrigkgettdmrftkelnkaqgknvmdkkdnevqaafakitmlcdaaelpkivkdcakeayklchdektlkgksmesimaasiligcrraevartfkeiqslihvktkefgktlnimknilrgksEdgkidtdnmsgaqnltyiprfcshlglpmqvttsaeytakkckeikeiagkspitiavvsiylnillfqipitaakvgqtlqvtegtiksgykilyehrdklvdpqliangvvsldnlpgv > 7o72_O interface=10,12,40,41,55,57,63,65,100,102,131,132,146,148,154,156, tsgivptlqNiVatvtlgcrldlktvalharnaeynpkrFAavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 7o72_Q interface= tnaspfikrDrMrrnflrmrdpneynefplraipkedleNMrthllkfqskkkiNpVtdfhlPvRlhrkdtrnlqfqltraeivqrqkeiseykklrrkTrQlkvldenakklrfeefypwvmedfdgynTWvgsyeagnsdsyvLlSveddgSfTmipadkvykftarnkyatltideaekrmdkksgevprwlmkhldnigttttrydrtrrklkavadq > 7o72_R interface= evfdgndieNnEtkvyeesldldlersnrqvwlvrlpmfLAekwrdrnnlhgqeLgKirinkDgSkitlllnendndsipheydleltkkvveneyvftEqNlkkyqrdryipyvktipkktaivgtvchECqvmpsmndpnyhkIvEqrrniVkLnnkerittldetvgvtmshtgmsmrsdnsnflkvgrekaksniksirmpkkeildylfklfdeydywslkglkertrqpeahlkecldkvatlvkytlrpeykkl > 7o72_U interface= naeasrvyeIiVesvvnevredfenagideqtlqdlkniWQkkltetkvttfswDyLispdeNlMlclydkvtrtkarwkcslkdgvvtinrndytfqkAqVeaewv > 7o72_W interface= drpiddivkNlLkfvvrgfyggsfvlvldailfhsvlaeDDlkqllsinktelgPlIarlrsDrLisihkqreervyyyvkyphaidaikwkvhqvvqrLkDdldknsepngymcpicltkytqleavqlLNfdrteflcslcdePlVeddsgKkNkekqdklnrlmdqiqpiidslkkiddsrieentfeialarlippqnqshaaytynpkkgstmfrpgdsapatlhinittasdevaqrelqerqaeekrkqnavpewhkqstigktalgreerenektlndyyaalakkqaledefedv > 7o72_X interface= siaaaalqaNqTdiskshdsskllwateyiqkkgkpvlvNElldylsmkkddkvIeLlkkldRiEfdpkkgtfkylstydvhspsellkllrsqvtfkgIsCkdlkdgwpqcdetinqleedskilvlrtKKdktpryvwynsggNlKcideeFvKmwenvqlpqfaelprklqdlglkpasvdpatikrqtnthmtgilkdyshr
interface signature	NKH/E/E/NVFALFVTNVFPLFVT/DMNMNVPRTQTWLSST/NELALKDSENECIEVL/IVWQDLNMAV/NLDDPIDLLDLNPVKN/NTNEILREICKKNKFK

Estimated binding specificities ?

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# IC=9.337 IC/col=0.195 n_of_columns=48

specificity:

A |  11  96   9  96   0  96  96   9  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0
C |   9   0   9   0   0   0   0   9  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96
G |   9   0  11   0   0   0   0   9  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0
T |  67   0  67   0  96   0   0  69  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0

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updated Thu Dec 1 08:17:22 2022