7o73_7ABMOQRUWX : 3D-footprint complex

structure name	YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CLOSED DISTORTED PROMOTER DNA
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7o73_7 interface= padfvpdsvsgmfrshdfsylrlrpdhasrplwispsdgriilesfsplaeqaqdflvtiaepisrpshiheykitayslyaavsvgletddiisvldrlskvpvaesiinfikgatisygkvklvikhnryfvettqadilqmllndsvigvhsfeianesvevvkkrcqeidypvleeydfrndhrnpdldidlkpstqirpyqekslskmfgngrarsgiivlpcgagktlvgitaactikksvivlctssvsvmqwrqqflqwctlqpencavftsdnkemfqtesglvvstysmvantrnrshdsqkvmdfltgrewgfiildevhvvpaamfrrvvstiaahaklgltatlvreddkigdlnfligpklyeanwmelsqkghianvqcaevwcpmtaefyqeylretarkrmllyimnptkfqacqfliqyherrgdkiivfsdnvyalqeyalkmgkpfiygstpqqermnilqnfqyndqintiflskvgdtsidlpeatcliqisshygsrrqeaqrlgrilrakrrndegfnaffyslvskdtqemyystkrqaflvdqgyafkvithlhgmenipnlayasprerrellqevllknhplirkmy > 7o73_A interface=188,189, vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgswkkdDEpelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfsllsfdqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtrhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmideeslvkym > 7o73_B interface= fedesapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhttesdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyeaidvpgrelkyeliaeesegkvfigrlpimlrskncylseatesdlyklkecpfdmggyfiingseKVliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcvedgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveeahdfnmklainaktitsglkyalatgnwgeragvsqvlnrytysstlshlrrtntpigklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdidveeytwssllneglveyidaeeeesiliamqpedlepaedvdpakrirvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpispdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrsrdf > 7o73_M interface= rgpnlnivltcpeckvyppkiverfsegdvvcalcglvlsdklvdrvgeasnplldgnnlstrigkgettdmrftkelnkaqgknvmdkkdnevqaafakitmlcdaaelpkivkdcakeayklchdektlkgksmesimaasiligcrraevartfkeiqslihvktkefgktlnimknilrgkseDGkidtdnmsgaqnltyiprfcshlglpmqvttsaeytakkckeikeiagkspitiavvsiylnillfqipitaakvgqtlqvtegtiksgykilyehrdklvdpqliangvvsldnlpgv > 7o73_O interface=10,12,40,55,57,63,65,100,102,131,132,146,148,154,156, tsgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 7o73_Q interface= naspfikrdRmRrnflrmrdpneynefplraipkedlenMrthllkfqskkkinPvTdfhlpVrLhrkdtrnlqfqltraeivqrqkeiseykklrrktRqLkvldenakklrfeefypwvmedfdgyntWVgsyeagnsdsyvlLsVeddgsFtMipadkvykftarnkyatltideaekrmdkksgevprwlmkhldnigttttrydrtrrklkavadq > 7o73_R interface=200,236, evfdgndiennetkvyeesldldlersnrqvwlvrlpmflaekwrdrnnlhgqelgkirinkdgskitlllnendndsipheydleltkkvveneyvfteqnlkkyqrdryipyvktipkktaivgtvchecqvmpsmndpnyhkiveqrrnivklnnkerittldetvgvtmshtgmsmrsdnsnflkvgrekaksniKsirmpkkeildylfklfdeydywslkglkertrqpEahlkecldkvatlvkkgpyafkytlrpeykkl > 7o73_U interface= naeasrvyeiivesvvnevredfenagideqtlqdlkniwqkkltetkvttfswdylispdenlmlclydkvtrtkarwkcslkdgvvtinrndytfqkaqveaewv > 7o73_W interface=79, drpiddivknllkfvvrgfyggsfvlvldailfhsvlaeddlkqllsinktelgpliarlrsdrlisihkqreyppnsKsvervyyyvkyphaidaikwkvhqvvqrlkddldknsepngymcpicltkytqleavqllnfdrteflcslcdeplveddsgkknkekqdklnrlmdqiqpiidslkkiddsrieentfeialarlippqnqshaaytynpkkgstmfrpgdsapatlhinittasdevaqrelqerqaeekrkqnavpewhkqstigktalgreerenektlndyyaalakkqaledefedv > 7o73_X interface= siaaaalqanqtdiskshdsskllwateyiqkkgkpvlvnelldylsmkkddkviellkkldriefdpkkgtfkylstYdvhspsellkllrsqvtfkgisckdlkdgwpqcdetinqleedskilvlrtkkdktpryvwynsggnlkcideefvkmwenvqlpqfaelprklqdlglkpasvdpatikrqitnthmtgilkdyshr
interface signature	/DE/KV/DG/NVFLFVTNVFPLFVT/RRMPTVLRLWVLVFM/KE//K/Y

Estimated binding specificities ?

contact

# IC=10.077 IC/col=0.347 n_of_columns=29

specificity:

A |   6   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  78   0   6  96   0  78   0  96
C |   6   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6   0   6   0   0   6   0   0
G |   6  78  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6   0   6   0   0   6   0   0
T |  78   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6  96  78   0  96   6  96   0

scan!

home
updated Thu Dec 1 08:28:34 2022