interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A TRAPPED PAB-AGOG/SINGLE-STANDED DNA COVALENT INTERMEDIATE
(N-glycosylaseDNA lyase)
referenceGoffinont et al. 'To ? ? ?
sourcePyrococcus abyssi (strain GE5 / Orsay) / Pyrococcus abyssi (strain GE5 / Orsay)
experimentX-ray (resolution=2.04, R-factor=0.178)
structural superfamilyDNA-glycosylase;
sequence familyDomain of unknown function DUF1886;
multimeric complexes7oue_EG
reference complex7p0w_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYQTKRLQV

Estimated binding specificities ?

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# IC=4.007 IC/col=0.801 n_of_columns=5 specificity:   
A |  11   9   0   0   9
C |   9   9   0   0  11
G |   9   9   0   0   9
T |  67  69  96  96  67
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updated Fri Sep 13 05:34:29 2024