7qv9_Mb : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

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updated Sun Dec 15 13:32:54 2024

structure name	CRYOEM STRUCTURE OF BACTERIAL TRANSCRIPTION INTERMEDIATE COMPLEX MEDIATED BY ACTIVATOR PSPF
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;cAMP-binding domain-like;"Winged helix" DNA-binding domain;P-loop containing nucleoside triphosphate hydrolases;Putative DNA-binding domain;beta and beta-prime subunits of DNA dependent RNA-polymerase;Nucleic acid-binding proteins;Rho N-terminal domain-like;Probable bacterial effector-binding domain;Homeodomain-like;lambda repressor-like DNA-binding domains;CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	3iyd_A 3iyd_H 5nss_G 6ldi_G 6vu3_A 6vz3_A 6xas_B 6xh7_H 6xl5_H 7c97_K 7vwz_G 7w5x_A 8igr_C 8jo2_H 8u3b_G 8upo_A 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qv9_M interface=15,16,17,18,19,20,22,23,268,271,272,275,317,319,320,322,323,395,396,397, mkqglqlrlsqqlaMTPQLQqAIrllqlstlelqqelqqalesnpllelpvyqgettqtlqdylmwqveltpftdtdraiatsivdavddtgyltiqiedivdsigddeigleeveavlkriqrfdpvgvaakdlrdclliqlsqfaketpwleearliisdhldllanhdfrtlmrvtrlkeevlkeavnliqsldprpgqsiqtsepeyvipdvlvrkvsgrwtvelnadsiprlkinqqyaamgnsarndadgqfirsnlqearWliKSleSrndtllrvsrciveqqqaffeqgeeymkpmvladiaqavemHeSTiSRvttqkylhsprgifelkyffsshvntegggeasstairalvkkliaaenpakplsdskltsmlseqgimvaRRTvakyreslsippsnqrkqlv > 7qv9_b interface=85, maeykdnllgeansflevleqvshlapldkpvliigergtgkeliasrlhylssrwqgpfislncaalnenlldselfgheagaFtgaqkrhpgrferadggtlfldelatapmmvqekllrvieygelervggsqplqvnvrlvcatnadlpamvnegtfradlldrlafdvvqlpplreresdimlmaeyfaiqmcreiklplfpgfteraretllnyrwpgnirelknvversvyrhgtsdyplddiiidpfkrr