interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.


Dendrogram of similar interfaces ?

matrix format
structure nameHUMAN DNA POLYMERASE BETA CROSSLINKED TERNARY COMPLEX 2
(DNA polymerase beta)
referenceProc.Natl.Acad.Sci.USA 119 e2118940119 2022 X-RAY DIFFRACTION
sourceHomo sapiens
experimentX-ray (resolution=1.75, R-factor=0.182)
structural superfamilyNucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;PsbU/PolX domain-like;
sequence familyFingers domain of DNA polymerase lamb;
redundant complexes1huz 7icr 7ics 7ict 7icu 7icv 8ica 8icb 8icc 8ice 8icf 8icg 7rbg 8ich 8ici 8icj 9icw 8ick 8icl 8icm 8icn 8ico 3v7j 8icp 3uxp 1huo 8icq 1zqa 8icr 3ogu 1zqb 8ics 1zqc 8ict 1zqd 8icu 1zqe 8icv 1zqf 8icw 1zqg 8icx 1zqh 8icy 1zqi 8icz 1zqj 9ica 1zqk 9icb 2bpf 1zql 9icc 1zqm 9ice 1zqn 9icf 1zqo 9icg 1zqp 9ich 1zqq 9ici 1zqr 9icj 1zqs 9ick 1zqt 9icl 9icm 9icn 9ico 9icp 9icq 9icr 9ics 9ict 9icu 9icv 9icx 3v72 9icy 3v7k 7mz3 7rbe 7mz4 7rbf 7mz8 7rbi 7rbj 7rbk 7rbl 7rbm 7rbn 7rbo 7ice 7icf 7icg 7ich 7ici 7icj 7mz0 7ick 7mz1 7icl 7mz2 7icm 7icn 7ico 7icp 7icq
reference complex8vfg_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --WC--LC------KA--YCATNTRARG--                +--------------------7m08_A    
                                         +------2 
  ------LC--RC--RAFT--KG--RARG--         !      +--------------------7kt2_A    
                                       +-3 
  --------------KC----KA--VARA--       ! !             +-------------4p4m_A    
                                     --4 +-------------1 
  --------------KT--HCVGLCIGRG--       !               +-------------5hrb_A    
                                       ! 
  NGFGRGRCAG--RGRC----KC--ICRCET   L   +-----------------------------3auo_B

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updated Fri Sep 13 07:28:24 2024