7s03_A : 3D-footprint complex

structure name	DNA-BINDING DOMAIN OF HUMAN SETMAR IN COMPLEX WITH HSMAR1 TERMINAL INVERTED REPEAT (TIR) DNA (Histone-lysine N-methyltransferase SETMAR)
reference	Georgiadis et al. J.Biol.Chem. 298 101894 2022
source	Homo sapiens
experiment	X-ray (resolution=2.37, R-factor=0.212)
structural superfamily	Homeodomain-like;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7s03_A interface=41,42,43,45,46,63,66,87,88,97,98,99,100,102,103, kmmldkkqiraiflfefkmgrkaaettrnmnnafgpgtanERTvQWwfkkfrkgdesledeeRsgRpsevdndqlraiieadplttTRevaeemnvNHSTvVRhlkqi
interface signature	ERTQWRRTRNHSTVR

Estimated binding specificities ?

readout + contact

# IC=18.797 IC/col=0.940 n_of_columns=20

specificity:

A |   4   0   0   0  96  69  24   9  93   9  24   0   2   2   0   0  91   0   0  76
C |  79  96   0  93   0   9  24   4   1  64  24   0   8   4   0  96   2  96  96   7
G |   6   0  96   2   0  11  24   4   2   9  24   0   7   2  96   0   2   0   0   9
T |   7   0   0   1   0   7  24  79   0  14  24  96  79  88   0   0   1   0   0   4

scan!

home
updated Tue Dec 19 20:38:47 2023