interface graph thumbnail
legend  pdf

structure nameS. CEREVISIAE ORC BOUND TO 84 BP ARS1 DNA AND CDC6 (STATE 1) WITH DOCKED ORC6 N-TERMINAL DOMAIN
experimentNMR
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;Inhibitor of apoptosis IAP repeat;"Winged helix" DNA-binding domain;
reference complex5v8f_B 5v8f_C 5v8f_D 5v8f_E 5zr1_A 5zr1_F 7mca_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureFKRY/RTW/KLD/FYNY/RRYR/KCLC

Estimated binding specificities ?

readout + contactlogo
# IC=17.799 IC/col=0.593 n_of_columns=30 specificity:   
A |   2   1   2  90   2   0   0  24   5  96   2  24  24  24  24  24  24  24  24  24  24  24  24  14   0   0   0   0   2   0
C |   2   0   8   0   4   0   3  24  11   0   5  24  24  24  24  24  24  24  24  24  24  24  24   8   0  96   2   0   2   0
G |   5  17   5   5   0  96   0  24   8   0  84  24  24  24  24  24  24  24  24  24  24  24  24   5  96   0   0   0  75   0
T |  87  78  81   1  90   0  93  24  72   0   5  24  24  24  24  24  24  24  24  24  24  24  24  69   0   0  94  96  17  96
scan!

home
updated Fri Jun 26 20:37:56 2026