7u1t_ABCD : 3D-footprint complex

Interface of input file ?

structure name	EBNA1 DNA BINDING DOMAIN (401-641) BINDS TO HALF DYAD SYMMETRY ELEMENT
experiment	NMR
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u1t_A interface=23,27,28,32,40,78,81, paddpgegpstgprgqgdggrrKkggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggskTslYnlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppm > 7u1t_B interface=2,8,11,12,16,24,61,62,65,66, gDggrrkKggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppmve > 7u1t_C interface=24,27,28,40,41,77,78,81,82,85, paddpgegpstgprgqgdggrrkKggWFgkhrgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppm > 7u1t_D interface=8,9,12,13,15,17,25,26,62,63,66, qgdggrrKKggWFgKhRgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYnlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppm
interface signature	KWFRKTY/DKWFRKKTYN/KWFKFKTYNR/KKWFKRKFKTY

Estimated binding specificities ?

readout + contact

# IC=35.519 IC/col=0.935 n_of_columns=38

specificity:

A |   0  24  94   0  96   0   1  93  24  24   2  24   1   0   4   0   0   0  24  24  24   1   0  24   1  96   1  94  12  82   0   1   0   0  96   0   0   1
C |  94  24   1   0   0   0  90   1  24  24   1  24  90   0   1  96  96  96  24  24  24   1   0  24   1   0  86   1   7   1   0   0  95   1   0   0  86   2
G |   0  24   1   0   0  96   4   1  24  24   1  24   4   0   1   0   0   0  24  24  24  90  96  24   0   0   5   1   3   4   0  94   1   9   0   0   1  92
T |   2  24   0  96   0   0   1   1  24  24  92  24   1  96  90   0   0   0  24  24  24   4   0  24  94   0   4   0  74   9  96   1   0  86   0  96   9   1

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updated Sun Dec 15 15:12:07 2024