7u5d_BCDEFG : 3D-footprint complex

Interface of input file ?

structure name	I-F3B CASCADE-TNIQ FULL R-LOOP COMPLEX
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u5d_B interface=36,65,66,67,68,222,225, lcthlsysrslspgkavffyktaesdfvplrievaKisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFteRpddhsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkgglfqkg > 7u5d_C interface=65,66,67,68,222,233,338,340, lcthlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFterpddhsvaSrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5d_D interface=4,65,66,67,68,224,229,233,338,340, lctHlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkftErpddHsvaSrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5d_E interface=4,36,65,66,67,68,222,224,233,338,340, lctHlsysrslspgkavffyktaesdfvplrievaKisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFtErpddhsvaSrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5d_F interface=4,65,66,67,68,222,338,340, lctHlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFterpddhsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5d_G interface=4,193,296,298, lctHlsysrslspgkavffyktaesdfvplrievakipqtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFtesrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlesselpgevhylmavlvkggLfQkg
interface signature	KSNPQFR/SNPQFSLQ/HSNPQEHSLQ/HKSNPQFESLQ/HSNPQFLQ/HFLQ

Estimated binding specificities ?

contact

# IC=21.050 IC/col=0.369 n_of_columns=57

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   2  14   0  16   7  21  67  96   0  16   0  23   2  96   0   0  96  21  19   7   0  16   2  19  14  90   0  16   4  24  23  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   2  14  96  48  74  33   9   0  96  16   0  21   4   0   0   0   0  23  19   7  96  16   2  38  52   2   0  16  88  24  21  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  88  16   0  16   7  21   9   0   0  19   0  31  88   0   0  96   0  21  20   7   0  19   2  19  16   2  96  19   2  24  21  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4  52   0  16   8  21  11   0   0  45  96  21   2   0  96   0   0  31  38  75   0  45  90  20  14   2   0  45   2  24  31  24  24  24  24  24

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updated Sun Dec 17 13:15:02 2023