7u5e_BCDEFG : 3D-footprint complex

structure name	I-F3B CASCADE-TNIQ PARTIAL R-LOOP COMPLEX
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u5e_B interface=65,66,67,68,222,225,229, lcthlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFteRpddHsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkgglfqkg > 7u5e_C interface=64,65,66,67,68,222,229,338,340, lcthlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaYSNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFterpddHsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5e_D interface=65,66,67,68,222,338,340, lcthlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFterpddhsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5e_E interface=65,66,67,68,222,224,338,340, lcthlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaySNPQtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFtErpddhsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5e_F interface=4,222,338,340, lctHlsysrslspgkavffyktaesdfvplrievakisgqkcgytegfdanlkpknieryelaysnpqtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkFterpddhsvasrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlessegggvelpgevhylmavlvkggLfQkg > 7u5e_G interface=296,298, lcthlsysrslspgkavffyktaesdfvplrievakipqtieacyvppnvdelycrfslrveansmrpyvcsnpdvlrvmiglaqayqrlggynelarrysanvlrgiwlwrnqytqgtkieiktslgstyhipdarrlswsgdwpeleqkqleqltsemakalsqpdifwfadvtaslktgfcqeifpsqkftesrqlatvecsdgqlaacinpqkigaalqkiddwwandadlplrvheyganhealtalrhpatgqdfyhlltkaeqfvtvlesselpgevhylmavlvkggLfQkg
interface signature	SNPQFRH/YSNPQFHLQ/SNPQFLQ/SNPQFELQ/HFLQ/LQ

Estimated binding specificities ?

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# IC=17.602 IC/col=0.533 n_of_columns=33

specificity:

A |  14  12  24  96  45   0   0   7  21   0  67   0   0  96  19   9  20   0  16  14  24  12  96   0   0  21  24  16  24  24  24  24  24
C |  52  60  24   0  16  96   0   8  21   0  11   0   0   0  19   9  19  96  19  16  24  60   0   0   0  31  24  16  24  24  24  24  24
G |  14  12  24   0  19   0   0   7  31  96   9   0  96   0  19  11  19   0  16  14  24  12   0  96   0  23  24  16  24  24  24  24  24
T |  16  12  24   0  16   0  96  74  23   0   9  96   0   0  39  67  38   0  45  52  24  12   0   0  96  21  24  48  24  24  24  24  24

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updated Sun Dec 17 13:16:24 2023