7und_ABEZabdefgh : 3D-footprint complex

Interface of input file ?

structure name	POL II-DSIF-SPT6-PAF1C-TFIIS-NUCLEOSOME COMPLEX (STALLED AT +38)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7und_A interface=222,281,314,411,412,804,805,1327, dsacplrtikrvqfgvlspdelkrmsvteggikypetteggrpklgglmdprqgviertgrcqtcagnmtecpghfghielakpvfhvgflvktmkvlrcvcffcskllvdsnnpkikdilakskgqpkkrlthvydlckgknggcgryqprirrsglelyaewkkkillspervheifkrisdeecfvlgmepryarpewmivtvlpvpplsvrpavvmrNqddlthkladivkinnqlrrneqngaaahviaedvkllqfhvatmvdnelpglpramqKsgrplkslkqrlkgkegrvrgnlmgkrvdfsaRtvitpdpnlsidqvgvprsiaanmtfaeivtpfnidrlqelvrrgnsqypgakyiirdngdridlrfhpkpsdlhlqtgykverhmcdgdivifnrQPtlhkmsmmghrvrilpwstfrlnlsvttpynadfdgdemnlhlpqsletraeiqelamvprmivtpqsnrpvmgivqdtltavrkftkrdvflergevmnllmflstwdgkvpqpailkprplwtgkqifsliipghincirthsthpddedsgpykhispgdtkvvvengelimgilckkslgtsagslvhisylemghditrlfysniqtvinnwllieghtigigdsiadsktyqdiqntikkakqdvieviekahnneleptpgntlrqtfenqvnrilndardktgssaqkslseynnfksmvvsgakgskinisqviavvgqqnvegkripfgfkhrtlphfikddygpesrgfvensylagltptefffhamggreglidtavkTAetgyiqrrliksmesvmvkydatvrnsinqvvqlrygedglagesvefqnlatlkpsnkafekkfrfdytneralrrtlqedlvkdvlsnahiqnelerefermredrevlrvifptgdskvvlpcnllrmiwnaqkifhinprlpsdlhpikvvegvkelskklvivngddplsrqaqenatllfnihlrstlcsrrmaeefrlsgeafdwllgeieskfnqaiahpgemvgalaaqslgepatqmtknvtlgvprlkeliniskkpktpsltvfllgqsardaerakdilcrlehttlrkvtantaiyydpnpqstvvaedqewvnvspwllrveldrkhmtdrkltmeqiaekinagfgddlncifnddnaeklvlririmndddvflrciesnmltdmtlqgieqiskvymhlpqtdnkkkiiitedgefkalqewiletdgvslmrvlsekdvdpvrttsndiveiftvlgieavrkalerelyhvisfdgsyvnyrhlallcdtmtcrghlmaitRhgvnrqdtgplmkcsfeetvdvlmeaaahgesdpmkgvsenimlgqlapagtgcfdllldaekckygmgapaygawspsvgsgmtpgaagfpsaasd > 7und_B interface=454, eitpdlwqeacwivissyfdekglvrqqldsfdefiqmsvqrivedappidlppryllkfeqiylskpthwedgapspmmpnearlrnltysaplyvditktvikegeeqlqtqhqktfigkipimlrstycllngltdrdlcelnecpldpggyfiingsekvliaqekmatntvyvfakkdskyaytgecrsclenssrptstiwvsmlarigqrivatlpyikqevpiiivfralgfvsdrdilehiiydfedpemmemvkpsldeafviqeqnvalnfigsrgakpgvtkekrikyakevlqkemlphvgvsdfcetkkayflgymvhrlllaalgrrelddrdhygnkrldlagpllaflfrgmfknllkevriyaqkfidrgkdfnlelaiktriisdglkyslatgnwgdqkkahqaragvsqvlnrltfastlshlrrlnspigrDgklakprqlhntlwgmvcpaetpeghavglvknlalmayisvgsqpspilefleewsmenleeispaaiadatkifvngcwvgihkdpeqlmntlrklrrqmdiivsevsmirdirereiriytdagricrpllivekqklllkkrhidqlkereynnyswqdlvasgvveyidtleeetvmlamtpddlqekevaycstythceihpsmilgvcasiipfpdhnqsprntyqsamgkqamgvyitnfhvrmdtlahvlyypqkplvttrsmeylrfrelpaginsivaiasytgynqedsvimnrsavdrgffrsvfyrsykeqeskkgfdqeevfekptretcqgmrhaiydkldddgliapgvrvsgddviigktvtltkrdcstflrtsetgivdqvmvtlnqegykfckirvrsvripqigdkfasrhgqkgtcgiqyrqedmpftcegitpdiiinphaipsrmtighlieclqgkvsankgeigdatpfndavnvqkisnllsdygyhlrgnevlyngftgrkitsqifigptyyqrlkhmvddkihsrargpiqilnrqpmegrsrdgglrfgemerdcqiahgaaqflrerlfeasdpyqvhvcnlcgimaiantrthtyecrgcrnktqislvrmpyackllfqelmsmsiaprmmsv > 7und_E interface= ddeeetyrlwkirktimqlchdrgylvtqdeldqtleefkaqfgdkpsegrprrtdltvlvahnddptdqmfvffpeepkvgiktikvycqrmqeenitralivvqqgmtpsakqslvdmapkyileqflqqellinitehelvpehvvmtkeevtellaryklrenqlpriqagdpvaryfgikrgqvvkiirpsetagryityrlvq > 7und_Z interface= dpnlwtvkckigeerataislmrkfiayqftdtplqiksvvapehvkgyiyveaykqthvkqaiegvgnlrlgywnqqmvpikemtdvlkvvkanlkpkswvrlkrgiykddiaqvdyvepsqntislkmipridydrikappqrlfdaekirslggdvasdgdflifegnrysrkgflfksfamsavitegvkptlselekfrehnfqpgdnvevcegelinlqgkilsvdgnkitimpkhedlkdmlefpaqelrkyfkmgdhvkviagrfegdtglivrveenfvilfsdltmhelkvlprdlqlcsetasgvdvggqhewgelvqldpqtvgvivrleretfqvlnmygkvvtvrhqavtrkkdnrfavaldseqnnihvkdivkvidgphsgregeirhlfrsfaflhckklvenggmfvcktrhlvlaneligqtvrisqgpykgyiGvvkdatestarvelhstcqtisvdrqrlttvgsrrpggmtstygrygsqpmygsg > 7und_a interface=3,4,6, phRYrPgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 7und_b interface=16,26, kvlrdniqgitkpaiRrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 7und_d interface= ktrkesyaiyvykvlKqvhpdtgisSkamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 7und_e interface=2,5,45, hRyrPgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 7und_f interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 7und_g interface=64, aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 7und_h interface=2,11, tRkesyaiyvYkvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa
interface signature	NKRQPTAR/D//G/RYP/RR/KS/RPR/R/R/RY

Estimated binding specificities ?

readout + contact

# IC=5.302 IC/col=0.045 n_of_columns=117

specificity:

A |  24   2  21  24  24  24  24  24  24  24  21  18   0   2  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  16  33  24  22  24  24  24  24  24  24  24  24  24  24  24  22  36  14  14  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  14  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  20  52  10  24  24  24  22  24  24  22  24  24  24  24  24  24  24  24  24  24  22  24  24  24  24  24
C |  24  88  21  24  24  24  24  24  24  24  33  42   0   2  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  14  21  24  22  24  24  24  24  24  24  24  24  24  24  24  25  20  52  14  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  54  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  20  14  13  24  24  24  30  24  24  27  24  24  24  24  24  24  24  24  24  24  25  24  24  24  24  24
G |  24   2  21  24  24  24  24  24  24  24  21  18   0   2  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  52  21  24  27  24  24  24  24  24  24  24  24  24  24  24  22  20  14  52  24  24  24  24  24  24  24  24  24  24  24  24  24  24  57  14  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  36  14  63  24  24  24  22  24  24  22  24  24  24  24  24  24  24  24  24  24  22  24  24  24  24  24
T |  24   4  33  24  24  24  24  24  24  24  21  18  96  90  24  42  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  14  21  24  25  24  24  24  24  24  24  24  24  24  24  24  27  20  16  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  14  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  20  16  10  24  24  24  22  24  24  25  24  24  24  24  24  24  24  24  24  24  27  24  24  24  24  24

scan!

home
updated Thu Dec 1 23:24:34 2022