Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8j92_ABCDEFGH
redundant complexes8j90 8j92 8kcc
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--                             +-------------------6t7a_C    
                                      +--2 
  ------RG--                          !  !          +--------7e9c_G    
                               +------3  +----------1 
  ------RA--                   !      !             +--------7xsx_a    
                             +-4      ! 
  ------RT--                 ! !      +----------------------7lyb_G    
                           +-5 ! 
  ------RG--               ! ! +-----------------------------5t5k_E    
                         +-6 ! 
  --LT----RG             ! ! +-----------------------------8eue_E    
                       +-7 ! 
  --LT--RC--           ! ! +-----------------------------5xm1_A    
                     +-8 ! 
  ------RT--         ! ! +-----------------------------7wlr_E    
                   +-9 ! 
  ------RG--       ! ! +-----------------------------7k6p_A    
                 -10 ! 
  --IT------       ! +-----------------------------6r8y_H    
                   !  
  RAAANA----       +-----------------------------1jfi_B

home
updated Sat Sep 14 06:36:12 2024