Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8j92_ABCDEFGH
redundant complexes8j90 8j92 8kcc
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RA----                                     +1zla_C    
                                +--------------1 
  --RG----                 +----2              +8ox0_C    
                           !    ! 
  --RA--RA               +-3    +--------------6a5l_g    
                         ! ! 
  --RG----           +---4 +-------------------5x0y_G    
                     !   ! 
  --RG----         +-5   +---------------------8jla_C    
                   ! ! 
  ----RA--       +-6 +-------------------------6g0l_D    
                 ! ! 
  LCRT----     --7 +--------------------------8hr1_E    
                 ! 
  --RT----       +--------------------------8grq_A

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updated Wed Dec 18 13:26:30 2024