Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--                                    +--6t7a_C    
                                  +-------------2 
  ------RA--                  +---4             +--7xsx_a    
                              !   ! 
  ------RT--         +--------6   +----------------7lyb_G    
                     !        ! 
  ------RG--       +-9        +--------------------7e9c_G    
                   ! ! 
  ------RG--       ! +-----------------------------5t5k_E    
                   !  
  --LT----RG       !                             +8eue_E    
                   !               +-------------1 
  ------RG--     -10          +----3             +7k6p_A    
                   !          !    ! 
  --LT--RC--       !     +----5    +--------------5xm1_A    
                   !     !    ! 
  ------RT--       !   +-7    +-------------------7wlr_E    
                   !   ! ! 
  RAAANA----       +---8 +------------------------1jfi_B    
                       ! 
  --IT------           +-------------------------6r8y_H

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updated Tue Dec 19 22:55:10 2023