Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ----IT------                                   +-------6r8y_H    
                           +---------------------3 
  --------RT--             !                     !    +--7lyb_G    
                         +-7                     +----2 
  --------RA--           ! !                          +--7xsx_a    
                       +-8 ! 
  --------RG--         ! ! +-----------------------------5t5k_E    
                     +-9 ! 
  --------RA--       ! ! +-----------------------------6t7a_C    
                     ! ! 
  --------RG--       ! +-----------------------------7e9c_G    
                     !  
  LT--------RG       !                            +8eue_E    
                   -10              +-------------1 
  --------RG--       !         +----4             +7k6p_A    
                     !         !    ! 
  --------RT--       !    +----5    +--------------7wlr_E    
                     !    !    ! 
  LT------RC--       +----6    +-------------------5xm1_A    
                          ! 
  --RAAANA----            +------------------------1jfi_B    
                   

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updated Tue Dec 19 22:56:57 2023