Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8j91_ABCDEFGH 8j92_ABCDEFGH 8whb_ABCDEFGH
redundant complexes8j92_H 8wh9_H 8j90 8j91 8wh5 8wh8 8wha 8whb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ----------RA--               +-----------------------------6g0l_D    
                             +-9 
  --------RA--RA          +-10 +-----------------------------6a5l_g    
                          !  !  
  --------RG----          !  +-----------------------------8ox0_C    
                          !  
  --------RA----          !                            +1zla_C    
                       +-11             +--------------4 
  --------RG----       !  !             !              +8jla_C    
                       !  !   +---------7 
  --------RT----       !  !   !         !               +8u14_G    
                       !  !   !         +---------------1 
  --------RG----       !  !   !                         +5x0y_G    
                       !  +---8 
  --------RA----       !      !                         +7xsx_a    
                     -12      !           +-------------3 
  --------RT----       !      !           !             +8grq_A    
                       !      +-----------6 
  --------RG----       !                  !             +7e9c_G    
                       !                  !  +----------2 
  --------RG----       !                  +--5          +8txv_G    
                       !                     ! 
  LC------RT----       !                     +----------8hr1_E    
                       !  
  --RAAANA------       +-----------------------------1jfi_B    
                     

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updated Wed Dec 18 13:28:00 2024