Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8j91_ABCDEFGH 8j92_ABCDEFGH 8whb_ABCDEFGH
redundant complexes8j92_H 8wh9_H 8j90 8j91 8wh5 8wh8 8wha 8whb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ----------RA--             +-----------------------------6g0l_D    
                             !  
  --------RA--RA             !                             +6a5l_g    
                             !           +-----------------2 
  --------RG----             !           !                 +8txv_G    
                          +-10           ! 
  --------RA----          !  !  +--------8                   +7xsx_a    
                          !  !  !        ! +-----------------3 
  --------RT----          !  !  !        ! !                 +8grq_A    
                          !  !  !        +-7 
  --------RG----          !  !  !          !      +----------7e9c_G    
                          !  +--9          +------5 
  LC------RT----          !     !                 +----------8hr1_E    
                       +-11     ! 
  --------RA----       !  !     !                         +1zla_C    
                       !  !     !          +--------------4 
  --------RG----       !  !     !          !              +8jla_C    
                       !  !     +----------6 
  --------RT----     -12  !                !               +8u14_G    
                       !  !                +---------------1 
  --------RG----       !  !                                +5x0y_G    
                       !  !  
  --------RG----       !  +-----------------------------8ox0_C    
                       !  
  --RAAANA------       +-----------------------------1jfi_B    
                     

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updated Sun Aug 3 20:41:11 2025