Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8j91_ABCDEFGH 8j92_ABCDEFGH 8whb_ABCDEFGH
redundant complexes8j92_H 8wh9_H 8j90 8j91 8wh5 8wh8 8wha 8whb
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RARA                                    +6a5l_g    
                                 +--------------1 
  ------RC--            +--------7              +7yqk_C    
                        !        ! 
  ------RG--            !        +--------------8upf_G    
                        !  
  ------RT--            !          +------------8u14_G    
                   +---10    +-----6 
  ------RT--       !    !    !     +------------6px1_A    
                   !    !    ! 
  ------RA--       !    !    !                  +7xsx_a    
                   !    +----9      +-----------3 
  ------RC--       !         !      !           +7ux9_E    
                   !         ! +----5 
  ------RG--     -11         ! !    !          +8txv_G    
                   !         ! !    +----------4 
  ----HGRG--       !         +-8               +8rbx_V    
                   !           ! 
  ------RA--       !           !                +7e9c_F    
                   !           +----------------2 
  ------RG--       !                            +7e9c_G    
                   !  
  RAAANA----       +----------------------------1jfi_B

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updated Sat Jan 10 19:52:04 2026