7vn4_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MBP-FUSED BIL1/BZR1 (21-90) IN COMPLEX WITH DOUBLE-STRANDED DNA CONTANING TCCACGTGGA
reference	Tanokura et al. Nat.Plants ? ? 2022
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Periplasmic binding protein-like II;
reference complex	7vn3_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vn4_C interface=372,382,385,386,389,390, mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllaeitpaaafqdklypftwdavryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyaagkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsavnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqtnaarRkpswrerenNrrRErrRRavaakiytglraqgdynlpkhcdnnevlkalcveagwvveedgttyr > 7vn4_D interface=372,382,385,386,389,390, mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllaeitpaaafqdklypftwdavryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyaagkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsavnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqtnaarRkpswrerenNrrRErrRRavaakiytglraqgdynlpkhcdnnevlkalcveagwvveedgttyr
interface signature	RNRERR/RNRERR

Estimated binding specificities ?

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# IC=9.134 IC/col=0.913 n_of_columns=10

specificity:

A |   5   0   5  65   0   0  13   0   3  85
C |  10  93  85  13  96   0  15   0   3   3
G |   3   0   3   5   0  96  20  96  85   3
T |  78   3   3  13   0   0  48   0   5   5

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updated Wed Sep 11 15:18:46 2024