7vwy_CDFG : 3D-footprint complex

Interface of input file ?

structure name	CRYSTAL STRUCTURE OF (+)-PULEGONE REDUCTASE FROM MENTHA PIPERITA
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vwy_C interface=149,173,181,183,197,198,369,373,502,506,539,540,565, ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynaRiipyrgsWlDfefdpkdnlfvriDRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmRpgePptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdminakpisaavkEffgSsqlsqfmvqnnplseithkrrisalgpggltrERagfevrdvhpthygrvcpietpegPniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 7vwy_D interface=300,305,307,413,451,773,776, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgRaitgSnKrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraPtlhrlgiqafepvliegkaiqlhplvcaaynadfdgdQmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtAlkTansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmssiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 7vwy_F interface=4,6,7,10,20,253,255,256,266,267,289,290,293,295,298,299,300,302,303,304,307,325,331,379,381,383,454, rttDpVRmyMremgtvellTregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaensidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkytNRglqfldliqegniglmkavdkFEyrRgYkfSTYaTWWirQaitrsiadqartiripvHmietiNklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismeTpIgDdedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtRerirqieakalrklrhpsrsevlrsfldd > 7vwy_G interface=32,34,35,37,38,41,84,85,88,91, qagiirdlliwleghldqplsldnvaakagySkWHlQRmfKdvtghaigayirarrlsksavalrltarpildialqyrfdsqQTftRafKkqfaqtpalyrrspewsafgirpplrlgeftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlyglnetrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefiltvygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirr
interface signature	RRWDDRRPESERP/RSKPQAT/DVRMTNRLNRFERYSTYTWWQHNTIDR/SWHQRKQTRK

Estimated binding specificities ?

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# IC=34.337 IC/col=0.648 n_of_columns=53

specificity:

A |   0  96   0  24   3  24  96   0   0   0   0  96  96  24  96  96   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   6   0   7  24  71   0  84  24  24  24  24   0   0   0   0   7   0
C |   0   0   0  24  84  24   0   0   0   0   0   0   0  24   0   0   0  24  24   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   3   0   8  24  11  96   3  24  24  24  24   0   0   0  96   7   0
G |  96   0  96  24   6  24   0  96  96  96   0   0   0  24   0   0  96  24  24  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6   3   0  11  24   7   0   6  24  24  24  24  96   0  96   0   9  96
T |   0   0   0  24   3  24   0   0   0   0  96   0   0  24   0   0   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  84  84  96  70  24   7   0   3  24  24  24  24   0  96   0   0  73   0

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updated Wed Sep 11 15:34:12 2024