7w5y_ACDFK : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF SOXS-DEPENDENT TRANSCRIPTION ACTIVATION COMPLEX WITH FPR PROMOTER DNA
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7w5y_A interface=246,275, teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpNlteikdvlasrglslgmrlenwppa > 7w5y_C interface=173,181,183,197,198,365,369,372,467,501,538,539, ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynaRiipyrgsWlDfefdpkdnlfvriDRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiYrmmRpgEpptreaaeslfenlffsedrydlavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvRveravkerlslgdldtlmpqdminakpisaavkEffgssqlsqfmvqnnplseithkrrisalgpggltrERagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelglteekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 7w5y_D interface=303,304,306,774,775, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkssrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgraitgSNkRplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTAnsgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmssiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 7w5y_F interface=21,24,32,267,269,270,280,303,304,307,309,312,313,314,316,317,318,321,327,339,342,345,348,386,387,394,396,399,405,457,466,468,469,471, aaaqvlssveseigrttdpvRmyMremgtveLltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaensidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkytNrglqfldliqegniglmkavdkFEyrRgYkfSTYaTWWirQaitrsIadqartiripvHmiEtiNklNrisrqmlqemgreptpeelaermlmpedkirkvlkiaKEpsmetpIgDdeDshlgdFiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytlEevgkqfdvTrERiRqieakalrklrhpsrsevlrsfldd > 7w5y_K interface=34,36,37,39,40,85,86,87,90, mshqkiiqdliawidehidqplnidvvakksgySkWYlQRmfrtvthqtlgdyirqrrlllaavelrtterpifdiamdlgyvsQQTfsRvfrrqfdrtpsdyrhrl
interface signature	RN/RWDDRYREREER/SNRTA/RMLNRLNFERYSTYTWWQIHENNKEIDDFETERR/SWYQRQQTR

Estimated binding specificities ?

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# IC=40.081 IC/col=0.598 n_of_columns=67

specificity:

A |   0  96   0   4  24   1  69   0   0   0   0  96  96   0  96  96   0  24  24   1   0  24  24  24  24  24  24  24  24  24  24  24  24  24   7   5   0   0  96   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96  24  24  24   7   5  69  94
C |   0   0   0   1  24   4   9   0   0   0   0   0   0   0   0   0   0  24  24  90   0  24  24  24  24  24  24  24  24  24  24  24  24  24   5   3  96  96   0   0  24  24  96   0  24  24  24  24  24  24  24  24  24  24  24  24  96   0  96   0  24  24  24   7  76  11   0
G |  96   0  96   1  24  90  11  96  96  96   0   0   0   0   0   0  96  24  24   1   0  24  24  24  24  24  24  24  24  24  24  24  24  24   8   5   0   0   0  96  24  24   0  96  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  24  24   7   8   7   1
T |   0   0   0  90  24   1   7   0   0   0  96   0   0  96   0   0   0  24  24   4  96  24  24  24  24  24  24  24  24  24  24  24  24  24  76  83   0   0   0   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0  24  24  24  75   7   9   1

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updated Wed Sep 11 16:11:41 2024