Interface of input file ?

interface graph
legend  pdf

footprint
legend

structure nameCRYO-EM STRUCTURE OF SOXS-DEPENDENT TRANSCRIPTION ACTIVATION COMPLEX WITH FPR PROMOTER DNA
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRN/RWDDRYREREER/SNRTA/RMLNRLNFERYSTYTWWQIHENNKEIDDFETERR/SWYQRQQTR

Estimated binding specificities ?

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# IC=40.129 IC/col=0.599 n_of_columns=67 specificity:   
A |   0  96   0   1  24   1  71   0   0   0   0  96  96   0  96  96   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24   7   7   0   0  96   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96  24  24  24   7   5  69  94
C |   0   0   0   1  24   1   7   0   0   0   0   0   0   0   0   0   0  24  24  94   0  24  24  24  24  24  24  24  24  24  24  24  24  24   5   3  96  96   0   0  24  24  96   0  24  24  24  24  24  24  24  24  24  24  24  24  96   0  96   0  24  24  24   9  74   9   1
G |  96   0  96   4  24  90   9  96  96  96   0   0   0   0   0   0  96  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24   7   5   0   0   0  96  24  24   0  96  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  24  24   9   7  11   1
T |   0   0   0  90  24   4   9   0   0   0  96   0   0  96   0   0   0  24  24   2  96  24  24  24  24  24  24  24  24  24  24  24  24  24  77  81   0   0   0   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0  24  24  24  71  10   7   0
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updated Thu Jul 31 23:29:43 2025