Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7wlr_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RA----LTRC                                     +-------6jm9_A    
                                             +---4 
  --------RC                                 !   +-------6qld_f    
                                        +----6 
  RG------RG                            !    !           +7yqk_E    
                                     +--7    +-----------1 
  RG------RT                         !  !                +8g57_E    
                                   +-8  ! 
  RGYA--LCRT                       ! !  +----------------8byq_e    
                                   ! ! 
  RG------RT                   +--10 +-------------------8cww_A    
                               !   !  
  ------LT--                   !   !              +-----7ywx_E    
                               !   +--------------3 
  --------RA                +-12                  !   +-7xsx_a    
                            !  !                  +---2 
  ----RG----                !  !                      +-7k6p_D    
                         +-13  !  
  RT------RG             !  !  +------------------------7uv9_E    
                         !  !  
  RA----LTRC             !  +---------------------------3kwq_E    
                      +-14  
  RG----LC--          !  !                 +---------8bvw_e    
                      !  !       +---------5 
  --------RT          !  !    +--9         +---------7lyb_G    
                   +-15  !    !  ! 
  RT----LARG       !  !  +---11  +-------------------7unc_a    
                   !  !       !  
  RG--------     -16  !       +----------------------6a5l_e    
                   !  !  
  RA--------       !  +-----------------------------6kxv_A    
                   !  
  --------RA       +-----------------------------1kx5_G    
                 

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updated Sat Sep 14 07:04:16 2024