Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes7wlr_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG----                                +8txv_G    
                          +---------------1 
  --RG----            +--10               +8ox0_C    
                      !   !  
  --RA--RA            !   +---------------6a5l_g    
                 +---13  
  --RT----       !    !                   +8smw_G    
                 !    !   +---------------2 
  --RG----       !    +--11               +5x0y_G    
                 !        !  
  --RG----       !        +---------------8jla_C    
                 !  
  --RT----     -15                        +8u14_G    
                 !            +-----------3 
  --RA----       !  +---------8           +1zla_C    
                 !  !         ! 
  LCRT----       !  !         +-----------8hr1_E    
                 !  !  
  --RG--RG       +-14              +-------8kcb_A    
                    !  +-----------7 
  LARG----          !  !           +-------7unc_a    
                    !  !  
  --RC----          +-12               +---6qld_f    
                       !       +-------6 
  ----RA--             !       !       ! +-6g0l_D    
                       !       !       +-5 
  LC------             +-------9         +-8bvw_e    
                               ! 
  --RA----                     !           +7xsx_a    
                               +-----------4 
  --RT----                                 +8grq_A

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updated Wed Dec 18 13:56:22 2024