7x75_CDFGHKLMN : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR RNAP-PROMOTER OPEN COMPLEX WITH THREE ZUR DIMERS
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7x75_C interface=146,154,178,179,184,186,200,278,341,347,366,369,373,392,393,396,399,400,404,408,409,410,434,437,438,443,1041, astaplrisfakikeplevpnllalqtesfdwllgndawkarvesalesgqdvptksgleeifeeispiedfsgsmsltfrdhrfeppknsideckdrdftyaaplfvtaeftnnetgeiksqtvfmgdfplmtnkgtfvingteRvvvsqlvRspgvyfdssidktsdkdifsakiIPsrgaWlEmeidkrdmvgvriDrkrkqsvtvllkalgwtteqileefgeyesmratlekdhtqgqddalldiyrklrpgepptreaaqtllenlyfnpkRydlakvgrykvnkklgadepldagvlttddviatikylvklhagetetvgesgreivvetddIdhfgnRrirnvgeliqnqvrtglaRmeRvvrErmttqdveaitpqtliniRPvvAsiKEffgTsqlSQFmdqnnplsglthkrrlnalgpggLsrERagfeVrdvhpshygrmcpietpegpnigligslasygrinpfgfietpyrkvvegqvtddvdyltadeedrfviaqanaalgddmrfaearvlvrrrggevdyvpgddvdymdvsprqmvsvatamipflehddanralmganmmrqavpliksesplvgtgmeyrsaadagdvvkaekagvvqevsadyitttnddgtyityrlakfsrsnqgtsvnqkvivaegdriiegqvladgpatengemalgknllvafmpweghnyedaiilsqrlvqddvlssihieehevdardtklgpeeitrdipnvseevladldergiirigaevvagdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphgeigkvigvrvfdreegdelppgvnqlvrvyvaqkrkitdgdklagrhgnkgviskinpiedmpfledgtpvdiilnplavpsrmnpgqvleihlgwlasrgwdvsglaeewaqrlqvigadkvepgtnvatpvfdgaredelagllqhtipnrdgermvlpsgkarlfdgrsgepfpepisvgymyilklhhlvddklharstgpysmitqqplggkaqfggqrfgeMevwaleaygaayalqelltiksddvtgrvkvyeaivkgenipepgipesfkvlikemqslclnvevlssdgmsie > 7x75_D interface=383,421,495,496,534,856, fdelriglataddirqwshgevkkpetinyrtlkpekdglfcekifgptrdwecycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldlapkdlekviyfaaymitfvdeerrtrdlpsleahvsverqqieqrrdsdlearakkletdlaeleaegakadvrrkvregaeremkqlrdraqreidrldevwnrfknlkvqdlegdellyrelrdrfgtyfdgsmgaaalqkrlesfdldeeaerlreiirtgkgqkktralkrlkvvsaflqtsnspkgmvldcvpvippdlrpmvqldggrfatsdlndlyrrvinrnnrlkrlldlgapeiivnnekrmlqeavdalfdngrrgRpvtgpgnrplkslsdmlkgkqgrfrqnllgkrvdysaRsvivvgpqlklhqcglpkamalelfkpfvmkrlvdlnhaqniksakrmvergrtvvydvleeviaehpvllnrAPtlhrlgiqafepqlvegkaiqihplvctafnadfdgdQmavhlplsaeaqaearilmlssnnilkpadgrpvtmptqdmvlglfflttdsegrspkgegrafgssaeaimafdagdltlqakidirfpvgtipprgfeppareegepewqqgdtftlkttlgralfnellpedypfvdyevgkkqlseivndlaerypkvivaatldnlkaagffwatrsgvtvaisdivvpdakkeivkgyegqdekvqkqyerglitkeertqeliaiwtkatnevaeamndnfpktnpvsmmvnsgargnmmqmrqiagmrglvsnaknetiprpikasfreglsvleyfisthgarkgladtalrTadsgyltrrlvdvsqdviireedcgterglklpiatrdadgtlrkaedvetsvyarmlaedvvidgkviapanvdlgdvlidalvahgveevktrsiltcesqvgtcamcygrslatgklvdigeavgiiaaqsigepgtqltmrtfhtggvagdditqglprvvelfeartpkgvapiseasgrvrieetektkkivvtpddgsdetafpiskrarllvgegdhvevgqkltvgatnphdvlrilgqravqvhlvgevqkvynsqgvsihdkhieiiirqmlrrvtiiesgdaellpgelvertkfetenrrvvqegghpasgrpqlmgitkaslateswlsaasfqettrvltdaainaksdsliglkenviigklipagtglsryrnirvepteeakaam > 7x75_F interface=6,7,10,13,15,18,73,75,76,78,84,85,91,113,115,118,119,120,122,123,124,127,130,131,144,145,148,203,206,273,274,275,276,278,279, atadpVKdyLkqIgKvpLlnaeqevelakrieaglfaedklansdklapklkreleiiaedgrraknhlleaNlRLvVslakrYTgrgmlFldliqegnlgliravekfdytKgYkfSTYaTWWirQaiTRamadqartiripVHmvEvinklarvqrqmlqdlgreptpeelakeldmtpekvievqkygrepislhtplgEdgDsefgdliedseavvpadavsftllqeqlhsvldtlsereagvvsmrfgltdgqpktldeigkvygvTRERiRQiesktmsklrhpsrsqvlrdyl > 7x75_G interface=6,44,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTtvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x75_H interface=6,28,44,45,47,48, ppvkgRatrqraavsaalqeveefrsaQelhdmlkhkgdavglTTvYRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x75_K interface=44,45,48, ppvkgratrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x75_L interface=6,43,44,45,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavgLTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x75_M interface=44,45,48, ppvkgratrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x75_N interface=6,44,45,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga
interface signature	RRIPWEDRIRRRERPAKETSQFLERVM/RRAPQT/VKLIKLNRLVYTFKYSTYTWWQTRVHEEDTRERRQ/RTR/RQTTYR/TTR/RLTTR/TTR/RTTR

Estimated binding specificities ?

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# IC=23.963 IC/col=0.289 n_of_columns=83

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   9  13  38   0   0   0  96   6   3   0  96  96  19  12  45  21  16  24  24  24  24  24  24  24  24  24  24  24  24  24  16   6   1  13  56  31  20  20  13  17  21  23  60  22  19  19  24  31  22  45  15  14   0  15  20  10  12  27  22  24  12  12  16  21  19  19   7
C |  24  24  24  24  24  24  24  24  24  24  24  24  24  96  96   0  67  13  20  96   0   0   0   6   3  96   0   0  39  12  16  31  14  24  24  24  24  24  24  24  24  24  24  24  24  24  19   6   2  56  13  21  34  20  56  15  21  31  12  34  19  16  24  21  30  16  49  52   0  15  20  10  60  25  22  24  12  12  45  31  20  19   8
G |  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96   9  14  19   0  96  96   0  78   3   0   0   0  19  12  16  23  52  24  24  24  24  24  24  24  24  24  24  24  24  24  45  78  92  14  13  23  20  34  14  49  33  21  12  20  19  45  24  21  22  19  17  16  96  15  34  10  12  22  25  24  12  60  19  23  19  19  74
T |  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  11  56  19   0   0   0   0   6  87   0   0   0  19  60  19  21  14  24  24  24  24  24  24  24  24  24  24  24  24  24  16   6   1  13  14  21  22  22  13  15  21  21  12  20  39  16  24  23  22  16  15  14   0  51  22  66  12  22  27  24  60  12  16  21  38  39   7

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updated Fri Dec 2 02:23:00 2022