7xaq_ACG : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF PVRA-DNA COMPLEX
experiment	NMR
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	7xaq_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xaq_A interface=29,41,45,46,51,52,109, kvrefrrreqeildtalklfleqgedsvTvemiadavgigKgtiYKhfksKAeiylrlmldyerdlaalfhsedvardkealsrayfefrmrdpqryrlfdrleekvvKtsqvpemveelhkirasnferltqlikeriadgklenvppyfhycaawalvhgavalyhspfwrevledqegffhflmdigvrmgnkrk > 7xaq_C interface=31,41, kvrefrrreqeildtalklfleqgedsvtvEmiadavgigKgtiykhfkskaeiylrlmldyerdlaalfhsedvardkealsrayfefrmrdpqryrlfdrleekvvktsqvpemveelhkirasnferltqlikeriadgklenvppyfhycaawalvhgavalyhspfwrevledqegffhflmdigvrmgnkrk > 7xaq_G interface=7,44,46,48,49,52, eprkvrEfrrreqeildtalklfleqgedsvtvemiadavgigKgTiYKhfKskaeiylrlmldyerdlaalfhsedvardkealsrayfefrmrdpqryrlfdrleekvvktsqvpemveelhkirasnferltqlikeriadgklenvppyfhycaawalvhgavalyhspfwrevledqegffhflmdigvrmgnkrk
interface signature	TKYKKAK/EK/EKTYKK

Estimated binding specificities ?

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# IC=17.833 IC/col=0.524 n_of_columns=34

specificity:

A |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96   1  24  16  24   5  16  24   0  96   0   0   0  96  96
C |  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   5  24  19  24  11  16  24   0   0  96  96   0   0   0
G |   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  16  24  18   8  24  96   0   0   0  96   0   0
T |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0  90  24  45  24  62  56  24   0   0   0   0   0   0   0

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updated Sun Dec 15 17:45:41 2024