7xaq_BDH : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF PVRA-DNA COMPLEX
experiment	NMR
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	7xaq_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xaq_B interface=11,32,33,34,44,46,48,49,52,53,109, eprkvrefrrReqeildtalklfleqgedsvTVEmiadavgigKgTiYKhfKSkaeiylrlmldyerdlaalfhsedvardkealsrayfefrmrdpqryrlfdrleeKvvktsqvpemveelhkirasnferltqlikeriadgklenvppyfhycaawalvhgavalyhspfwrevledqegffhflmdigvrmgnkrk > 7xaq_D interface=8,41,43,45,46,49, kvrefrrReqeildtalklfleqgedsvtvemiadavgigKgTiYKhfKskaeiylrlmldyerdlaalfhsedvardkealsrayfefrmrdpqryrlfdrleekvvktsqvpemveelhkirasnferltqlikeriadgklenvppyfhycaawalvhgavalyhspfwrevledqegffhflmdigvrmgnkrk > 7xaq_H interface=34,44, eprkvrefrrreqeildtalklfleqgedsvtvEmiadavgigKgtiykhfkskaeiylrlmldyerdlaalfhsedvardkealsrayfefrmrdpqryrlfdrleekvvktsqvpemveelhkirasnferltqlikeriadgklenvppyfhycaawalvhgavalyhspfwrevledqegffhflmdigvrmgnkrk
interface signature	RTVEKTYKKSK/RKTYKK/EK

Estimated binding specificities ?

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# IC=11.818 IC/col=0.358 n_of_columns=33

specificity:

A |   7   0   0   0   0  81  96  24  24  24  56  81  22   4  96  25  24  24  24  24  24  24  24  24  24  24  24  24  24  24  20  10  19
C |  81   0   0   0  96   7   0  24  24  24  13   7  25   7   0  27  24  24  24  24  24  24  24  24  24  24  24  24  24  24  34  10  20
G |   4  96  96   0   0   4   0  24  24  24  14   4  22  81   0  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  20  66  38
T |   4   0   0  96   0   4   0  24  24  24  13   4  27   4   0  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  22  10  19

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updated Sun Dec 15 17:46:40 2024