7xf1_A : 3D-footprint complex

structure name	CRYSTAL STRUCUTRE OF APOCASDING IN COMPLEX WITH SSDNA
reference	Zhang et al. Mol.Cell 83 2493 2023
experiment	X-ray (resolution=3.20, R-factor=0.209)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xf1_A interface=94,193,197,229,230,233,261,307,325,439,462,525,526,539,542,581, padalpgegavrevlrpllkqaaektaagkivfaeaatgtgkgrmiaslaaaaaikgdtvvvsaplavtwqlvndmkdipevrrvgltlslgrPnfispqrtlewaidneradlaawiegggkplslrsmetskvishelcwlledalllaedlpadsllltsedpadcpaqqlyvamrsnyteagiilcshFmlaAhtrmmqmrlslphfidtlivdeahlleqafaSVytHtlrlrplmrtiegldalkelftqmqvaTntslnvplsdvpelipalkdtvktlgalptkgmsrdarsviriatRaandalsghsrlrievtPvhsypmllsgrsnlqrallglwnatggatlvsatlfttgdngsltrwklevpteraaflppvhpawttapvllhkefcahepddspewatecaqtiqgvastaqggtlvlctsYqntellagrlgaalgdrlivqsKtssaatclaqfkakhkagirpvwlglgaawtgidlsdhslpdnpeldrllsdlvitripvgqNRsltherrtaiggFriIsqeaawhfrqglgrlvrrpgvthknlwvldariyggaaWvapfrqildrykk
interface signature	PFASVHTRPYKNRFIW

Estimated binding specificities ?

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# IC=9.163 IC/col=0.833 n_of_columns=11

specificity:

A |   0   0  21   0  12   0   9  14  14   0   0
C |   0   0  21   0  12   0   9  16  14   0   0
G |   0   0  21   0  12   0  11  14  14   0   0
T |  96  96  33  96  60  96  67  52  54  96  96

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updated Tue Dec 19 23:39:58 2023