7xg4_ABCD : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF TYPE IV-A CASDING BOUND NTS-NICKED CSF-CRRNA- DSDNA QUATERNARY COMPLEX IN A SECOND STATE
experiment	NMR
reference complex	7xfz_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xg4_A interface=51,75,79,120,121,175, mrypsdivdqvlkagpdkglltwegvdaacshcsrpiqngdlyspssvgaFfsdtrdlastsrsicwrcvvlrkKpmlYglsaavvtqdgiysiskdvnkawlfttpppapflvvhsssTMqhlswrtpvtldnrrihvrygpnlfivrpevvrkalsiadrvnegqkkwvtpvYfdrkaaamghglitragaemltqeeqeffqsvtpgerwalsylmhskrpepevgecitekvmtsln > 7xg4_B interface=86,104,109,111,117,119, vnlkvtidlsnpmmepgdllhldallgalrvsraraehgdainprdyhydlpleryqapsgdwvfkasafklkrqlpnqmwmqtgRlsiveaarhrqsgylqlRagkpNpAggpfkTsIyhrpivqaeltafcvgdqqgieallsecrqiggkrgvgfgqvagfkvepvaetdcpwswralpadadprlvtseharciaairgpywdrtlhvealaptp > 7xg4_C interface=21,22,28,29,30,32,33,36,38,39,42,181,226,229,230,231,232,235, mqievtvrnitpifsaapgsNYitidgTINpPPgvSrFPlvRtrmmyvaadvgdgviksvplqivpgntmrsllrrtmlkhviepalvekgnklsigayataysgnatgnpdgvpssfdeiatmrahpfiglfgggprmlegrlmvdslypihtnaerilgagyenemmsgpitqvvwarRmdpilnlgssedvevinggavaangwiqdllanskaaaskkkngRglKAFNahEvvipglkwvwrisldrptdaqvglvllalnkmtneriagghskdygrfvidgvslngeqvwsqsgitggeqyfdavaeaidglsskefeqfaqs > 7xg4_D interface=30,38,39,42,111,139,180,181,218,221,225,229,230,231, mqievtvrnitpifsaapgsnyitidgtiNpppgvsrFPlvRtrmmyvaadvgdgviksvplqivpgntmrsllrrtmlkhviepalvekgnklsigayataysgnatgnPdgvpssfdeiatmrahpfiglfgggprMlegrlmvdslypihtnaerilgagyenemmsgpitqvvwaRRmdpilnlgssedvevinggavaangwiqdllanskaAasKkkgRglkAFNahevvipglkwvwrisldrptdaqvglvllalnkmtneriagghskdygrfvidgvslngeqvwsqsgitggeqyfdavaeaidglsskefeqfaqsake
interface signature	FKYTMY/RRNATI/NYTINPPSFPRRRKAFNE/NFPRPMRRAKRAFN

Estimated binding specificities ?

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# IC=21.820 IC/col=0.992 n_of_columns=22

specificity:

A |  72   9  24  10  12   0   0   0  96  24   3  61   0   0  96   0   0  96   0   0  96   0
C |   9  68  24  74  12   3   0  96   0  24   0  12   0   0   0   0   0   0   0   0   0   0
G |   9  10  24   6  14   1   0   0   0  24   1  14   0   0   0   0   0   0   0   0   0   0
T |   6   9  24   6  58  92  96   0   0  24  92   9  96  96   0  96  96   0  96  96   0  96

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updated Sun Dec 15 18:15:04 2024