7xti_ABEWabhjk : 3D-footprint complex

Interface of input file ?

structure name	RNA POLYMERASE II ELONGATION COMPLEX TRANSCRIBING A NUCLEOSOME (EC58HEX)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xti_A interface=1338, sqfpyssaplrsvkevqfgllspeeiraisvvkieypeimdesrqrpregglndpklgsidrnfkcqtcgegmaecpghfghmelakpvfhigfipkikkvcecicmncgkllldetnptmaqairirdpkkrfnavwqlcktkmvceadapvsrggcgntqpvvrkdgmklwgtwkksrdaqperklltpgeilnvfkhispedcfrlgfnedyarpewmiitvlpvpppqvrpsiamdettqgqddlthklsdilkaninvqklemdgspqhiineveqllqfhvatymdndiagqpqalqksgrpvkairarlkgkegrlrgnlmgkrvdfsartvisgdpnleldqvgvpisiaktlsypetvtqynihrlteyvrngpnehpgakyvirdngdridlryhkragdivlqygwkverhlmdddpvlfnrqpslhkmsmmahrvkvmpystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpvmgivqdtlcgvrkmtlrdtfieyeqvmnmlfwvpswdgvvpqpailkpkplwtgkqllsiaipsgihlqrtdggnsllspkdngmlivdgkvmfgvvdkktvgsgggglihtvmrekgpkicaelfgniqkvvnywllhngfsigigdaiadastmkeithaissakeqvqeiiykaqhnelelkpgmtlresfegevsrtlndardsagrsaemnlkdlnnvkqmvsagskgsfiniaqmsacvgqqmvegkriafgfadrslphftkddfspeskgfvensylrgltpqefffhamagreglidtavktaetgyiqrrlvkaledimvhydgttrnslgdiiqflygedgldgtqverqtidtipgsdkafhkryyvdlmdeknsikpdvieyaadilgdvelqkelnseyeqlvsdrkflreivfvngdhnwplpvnlrriiqnaqqifhldrakasdltipeiihgvrdlckklfvlrgenelikeaqqnatslfqclvrarlatrrileefrlnrdafewvlgtieaqfqrslvhpgemvgviaaqsigepatqmnvtlgvprlkeilnvakniktpaltvyldreialdiekakviqssieyttlknvtsateiyydpdptstvieedfdtveayfsqspwllrleldrarmldkqltmnqvadkisevfsddlfvmwsednadkliircrvieedqmlkrieahmldlialrgipgiskvymvkhkvsvpdesgeykneelwaletdginlaevmavpgvdssrtysnsfveilsvlgieatrsslykeilnviafdgsyvnyrhmallvdvmtsrgylmaitRhginradtgalmrcsfeetveilfeagaaaelddcrgvsenvmlgqlapmgtgafdvmidekllts > 7xti_B interface=462, ddtittedcwtvisaffeekglvsqqldsfdefmetsiqdlvweeprlildqpaqhdninkryeirfgkiylsrptmteadgtthamfpqearlrnltysspvyldmeksmftsidgnkvhigkvpimlrskfcslrtldevdlykmkecpydmggyfvingsekvliaqersaanivqvfkkaapspishvaeirsalekgsrlistmqiklygredkgtgrtikatlpyvkqdipivivfralgvvpdgeilqhicydendwqmlemlkpcieegfviqdkevaldfigrrgsaalgirrekriqyakdilqkellphitqeegfetrktfflgymvnrlllcalerkdqddrdhfgkkrldlagpllanlfrilfrkltreiyrymqrcietdrdfnlnlavksttitsglkyslatgnwgeqkkamssragvsqvlnrytysstlshlrrtntpigrDgklakprqlhnthwglvcpaetpegqacglvknlsllsgisigspsepiinfleewgmepledydpaqhtkstrifvngvwtgihrdpsmlvstmrdlrrsgaispevsiirdirerefkiftdvgrvyrplfiveddeskdnkgelritkehirkiqqgydddvygwsslvtsgvieyvdgeeeetimiamtpedlqtndtakrikpemstsshhtfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplaktqameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekrfgisiveefekptrattlrlkhgtyekldedgliapgvrvsgddiiigkttpippdteelgqrtkyhtkrdastplrstengivdqvllttnqeglkfvkvrmrttkvpqigdkfasrhgqkgtigvtyrhedmpfsaegivpdliinphaipsrmtvahliecllskvgsirgyegdatpftdltvdavsnllrdngyqsrgfevmynghtgkklmaqvffgptyyqrlrhmvddkiharargpvqvltrqpvegrsrdgglrfgemerdcmiahgaagflkerlmeasdafrvhvcgicglmsvianlkknqfecrscknktniyqlhipyaakllfqelmamniaprlytersg > 7xti_E interface= ednnriisrlwrsfrtvkemaadrgyfisqeemdqsleefrskicdsmgnpqrklmsflanptpealekysdlgtlwvefcdepsvgiktmrnfclriqeknfstgifiyqnnitpsankmiptvspaiietfqesdlvvnithhelvpkhirlsdgeksqllqryklkesqlpriqredpvarylglkrgqvvkiirrsetsgryasyricl > 7xti_W interface= pqrlliptvddpgiwgvkvrlgkekdvvrqilkkklaregtknpleiysafqrdsfkghvyiearkaeaindalkgnvnvfsnnskflvgiveykdllrpvkssdvkltrgsyvrvkngkfkgdlaqvdevlenglearlklvprldygfrpaqrlfseaearvheptirrdrdgfvtyggeeyyegflyktfrlqnlivnsinptlnelslfqsneesttidlstiadslketaknlvsfqpgdnveiingelnhltgtvssvnqstivsvrlhsdddtinsetveiptsdlrkifnvgdhvrvihgkhtddtglivevngdkvefisnqtkrtvivfsnylikstdstvsinesgrfelhdlvqvnsdlvgiviraqkdsfdvlcsdgkllslppvsiysklnlnpnqqiaidsngvevkvgdtvreftgerrqgtilhvyrnflflrsreivenqgvfVtssnrvktirdptlnktvkirqggykgkigivkeangdrfrvelhnpnktipipcsflliesthgwvpyed > 7xti_a interface=4, lliRklpfqrlvreiaqdfktdlrfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger > 7xti_b interface= kvlRdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 7xti_h interface= srkEsysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 7xti_j interface=120,123, klrnettnteeekerlrkeiqkqlhekiqkeglarfnksdaqdgnenhavfkryesyvresqipskvknlrisidpkaqtiilpicgrpvpfhinsfkngskneegdymyirlnfnspgMgsSvkktelpyedgddkefvrsltfrstnkermsevfkaitelkktavkrdqerktmedvvaqaqlvefkgrpkklenvfvrpapdskrvtgtlfihqngiryqspvrsdhrvdilfsnikhlffqpckeelmviihchlktplmigkkktfdvqfyrevsddedeleqeqeerrrkalldkefrrfaeeiseasnglldletpfrelgftgvpfrssvlclptrdcliqlidtpflvvtleeievahlervqfglknfdlvfvfkdfskpvvhintipiemlefvkqwltdvdipysegavnlnwgtimktiqadpyeffenggwsflgggesddeeseeeesefqvsde > 7xti_k interface=215,271, mstvdfdtiflnqskapgrfritssglgwkpssqvptkgktdpfllpsgdilsvswsrgyrgwelrvytrndkvimldgfeqqdfqqlkneiqrtfnvnlehkehslrgwnwgktqltraelvfnvnnrpaweipyseisnsnltgrheismelnpktvdenhyetlgdelvevrlyvpgqksqlfyeqlkdkadfdttseaivsfedilfltpRgrfeismyannlrlrgqsydykiqnknvlrifslprlddrhhlvilqvdpplrqgQtrypflvmqfdrneelevelnlsdeeykskyegklnrsygtdstykilshclrglterrvitpgsfqsqhmqpgvncslkasegqiylldkclffatkpcvylpysgiisvvtsrgtgqstsrtfdievqfsggshtfaninkdeqkpiedflkgqgvrvkne
interface signature	R/D//V/R/R/E/MS/RQ

Estimated binding specificities ?

contact

# IC=2.152 IC/col=0.029 n_of_columns=74

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  21  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  22  24  24  24  24  13  52  18  16  31  24  24  24  24  24  24  24  24  24  39  27  24  24  24  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  21  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  30  24  24  24  24  57  16  42  14  21  24  24  24  24  24  24  24  24  24  19  25  24  24  24  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  23  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  22  24  24  24  24  13  14  18  52  21  24  24  24  24  24  24  24  24  24  19  22  24  24  24  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  31  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  22  24  24  24  24  13  14  18  14  23  24  24  24  24  24  24  24  24  24  19  22  24  24  24  24  24  24  24  24  24  24  24  24  24

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updated Fri Dec 2 04:36:24 2022