7y7s_A : 3D-footprint complex

structure name	QDE-1 IN COMPLEX WITH DNA TEMPLATE, RNA PRIMER AND AMPNPP (RNA-dependent RNA polymerase)
reference	Cui et al. 'Nucleic 50 10169 2022
source	Neurospora crassa
experiment	X-ray (resolution=2.70, R-factor=0.210)
sequence family	RNA dependent RNA polymerase;
multimeric complexes	7y7t_AB
reference complex	7y7t_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7y7s_A interface=85,98,100,130,156,200,375,389,555,556,674,676, hapvvaarlrniwpkfpkwlheaplavawevtrlfmhckvdledeslglkydpswstardvtdiwktlyrldafrkpfpekppnDvfvtamtgnfesKgSavvlsavldynpdnsptaplylvklkplmFeqgcrltrrfgpdrffeilipsptsTspsvppvvskqpgaveeviqwltmgqhslvgrqwraffakdagYrkplrefkpiikervhffaetgitfrpdepveqrtefkvsqmldwllqldnntwqphlklfsriqlglsktyaimtlephqirhhktdllspsgtgevmndgvgrmsrsvakrirdvlglgdvpsavqgrfgsakgmwvidvddtgdedwietypsqrkwecdfvdkhqrtlevRsvaselksaglnlQllpvledrardkvkmrqaigdrlindlqrqfseqkhalnrpvefrqwvyesyssratrvshgrvpflaglpdsqeetlnflmnsgfdpkkqkylqdiawdlqkrkcdtlksklnirvgrsayiymiadfwgvleenevhvgfsskfrdeeesftllsdcdvlvarSPahfpsdiqrvravfkpelhslkdviifstkgdvplakklsggdydgdmawvcwdpeivdgfvnaemplepdlsrylkkdkttfkqlmashgtgsaakeqttydmiqksfhfalqpnfLgMctnykerlcyinnsvsnkpaiilsslvgnlvdqskqgivfneaswaqlrrellggalslpdpmyksdswlgrgepthiidylkfsiarpaidkeleafhnamahfwdpdlasyytffkeisdksrssallfttlknrigevekeygrdskdpypvrvnqvyekwcaitpeskvirllelsfladremntwallrastafklyyhkspkfvwqmagrqlayikaqmtsrpgegapalmtafmyaglmpdkkftkqyvarleg
interface signature	DKSFTYRQSPLM

Estimated binding specificities ?

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# IC=4.201 IC/col=0.467 n_of_columns=9

specificity:

A |  96   0  14  24  24  21  24  24  96
C |   0   0  14  24  24  31  24  24   0
G |   0   0  52  24  24  23  24  24   0
T |   0  96  16  24  24  21  24  24   0

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updated Tue Dec 17 14:47:49 2024