7ye1_ACDFG : 3D-footprint complex

Interface of input file ?

structure name	THE CRYO-EM STRUCTURE OF C. CRESCENTUS GCRA-TACUP
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;C-terminal domain of RNA polymerase alpha subunit;
reference complex	7ye1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ye1_A interface=243, rnwnelirpekpqietgadatrkarivaeplergfgvtlgnalrrvllsslqgaavtaiqidgvvhefsslegvredvvdivlnikqlavrmhaegpkrmtlratgpgpvtagqietpadieilnpdhvlctlddgasvrmeftvnngkgyvpadrnrpedapigliavdalyspvkrvayrveptrldydklilevetngavtpvdavayaarilqdqlqifitfenpallkkvdelelsvRsanclkndnivyigdliqkteaemlrtpnfgrkslneikevlagmglhlgmdvpnwppeniedl > 7ye1_C interface=155,187,203,205,362,433,439,492,496,502,529,530,535, qsftgkkrirksfgripeavqmpnlievqrssyeqflqretrpglrrdegveavfksvfpikdfneravleyvsyefeepkydveeciqrdmtfaaplkvklrlivfeteeetgarsvkdikeqdvymgdiplmtdkgtfivngtervivsqmhRspgvffdhdkgkthasgkllfaarvipyrgsWldfefdakdivyvriDrRrklpattflyalgmdgeeilttfydvvpfekrsggwatpykperwrgvkpefplvdadtgeevapagtkitarqakkfadgglktlltgrylardaeiyaeagdeldvtsiqaladdvldidhvtvgaymrntlrvdknairedalfdiyrvmrpgEpptveaaeamfkslffdaerydlssvgrvkmnmrleqdvsdevrilrkedvlavlkvlvglrdgrgeiddIdnlgnRrvrsvgellenqyrvgllrmeraikermssvdidtvmphdlinakpaaaavrEffgSsqlsqFmdqtnplseithkrrlsalgpggltrERagfeVrdvhpthygricpietpegpniglinslatharvnkygfiespyrrvkdgkpqdevvymsameeskhviaqsnikvaegeivedlvpgringeptllqketvdlmdvsprqvvsvaaalipflenddanralmgsnmqrqavplvqsdaplvgtgmeavvardsgavviakrtgvveqidgtrivirateetdparsgvdiyrmskfqrsnqstcinqrplvkvgdrivagdiiadgpstelgelalgrnalvafmpwngynfedsiliserivrddvftsihieefevmardtklgpeeitrdipnvgeealrnldeagivaigaevqpgdilvgkvtpkgespmtpeekllraifgekasdvrdtslrlppgvagtivdvrvfnrhgvdkderalaieraeidrlgkdrddefailnrnisgrlkelligklaqvasglwwqialedekamgeleslrrlfdenrkrldrrfedkvdklqrgdelppgvmkmvkvfvavkrklqpgdkmagrhgnkgvisrilpiedmpfladgthvdvvlnplgvpsrmnvgqifethlgwacanlgkqitnlledwqqggqkqalverlteeelpdteeglvelarnlgkgvpiatpvfdgarmddieghlemagvnksgqsilfdgltgeqfkrpvtvgyiymlklhhlvddkiharsigpyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvagrtkvyesivrgddtfeagipesfnvlvkemrslglnvelen > 7ye1_D interface=198,305,412,766,767, tfdqirislaspekirswsfgeikkpetinyrtfkperdglfcarifgptkdyeclcgkykrmkykgiicekcgvevtlarvrrermghielaspvahiwflkslpsriammldmplkdiervlyfeyyivtepgltplkqhqllseddymraqeeygddsftaeigaeaiqnllkaidlekeaerlreelsgtvsdMkqkkfskrlkileafqesgnrpewmvltvvpvippelrplvpldggrfatsdlndlyrrvinrnnrlkrlielrapdiiirnekrmlqesvdalfdngrrgrvitgAnkrplksladmlkgkqgrfrqnllgkrvdysgrsvivvgpelklhecglpkkmalelfkpfiyarldakglsgtvkqskrmvereqpqvwdileevirehpvllnrAptlhrlgiqafepkliegkaiqlhplvcaafnadfdgdqmavhvplsleaqlearvlmmstnnilspangrpiivpsqdivlglyylsvardgepgegkifadlgeieaamdagvvslhakikarhtemtpegvllrkvidttpgrmkiaallphhpqighrliekaltkkeignlidivyrhcgqkatvifadkvmglgfkeaakagisfgkddiiipvrktaiveetrklaeeyeqqyitkgekynkvvdawakatdrvademmaelqmkhkdengrekeinaiymmahsgargsqaqmkqlggmrglmakpsgeiietpivsnfkegltvqeyfnsthgarkgladtalkTAnsgyltrrlvdvaqdciiveedcgttkgitlravveggdvlvslgsrvlgrftaedvkdpgtgelvvpadtyideniadaieaavvqsvkvrsvltceakigvcgacygrdlargtpvnigeavgviaaqsigepgtqlttgglprvaelfearrpkdcaviaemdgrvefgkdyknkrrikitpdkhiavhdgdyitkgeyiidgnpdphdilrilgvealanflvdeiqevyrlqgvpindkhietivrqmlqkveilepgdtglikgdhldkpefdkeqekaiarggrpavtqpvllgitkaslqtksfisaasfqettrvlteasvhgktdtleglkenvivgrlipagtgsylrslqrvaakrdeqlaqqre > 7ye1_F interface=7,8,11,20,268,270,271,278,282,286,305,307,313,314,315,317,318,319,322,325,326,339,340,342,345,346,349,387,388,390,394,396,398,399,402,407,469,470,471,473, drtddpVRmyLremgsvelLsregeiaiakrieagrdtmirglcesaltfeaimvwreelgtgrillrevidlegtyaaivsamegelregvmaildaiasefeafrklqdklvgsrlkgedlsdadrkayeglsatiiqhlktlklnnnriealveqlyainkrliglegrllrladsygisrgeflkayfgselnptwseqvkamgvrwtkfvendsqsvtdirseiaalatetgvpiddyrrivqtvqkgerearqakkemveaNlRLvisiakKytnRglqFldliqegniglmkavdkfEyRrgykfSTYaTWWirQaiTRsiadqartiripVHmIetINkiVrtsrqmlheigreptpeelaeklamplekvrkvlkiaKEpIsleTpIgDEedShlgdFiedknailpidaaiqsnlretttrvlasltpreervlrmrfgigmntdhtleevgqqfsvtRERiRqieakalrklkhpsrsrklrsfld > 7ye1_G interface=34,41,42, mswtdervstlkklwldglsasqiakqlggvtrNavigkvHRlglspgsatvltlgahmckwpigdpssegftfcgrrssegpycveharvayqpqqtkkksg
interface signature	R/RWDREIRESFERV/MAATA/VRLLNRLKRFERSTYTWWQTRVHIINVKEITIDESFRERR/NHR

Estimated binding specificities ?

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# IC=31.803 IC/col=0.740 n_of_columns=43

specificity:

A |  96   0   0   0  24  24   0   0   0   0  96  96   0  96  96   0   6  73  24   6  24  24   0  24  11   0  24  24  24  24  24  24   3   0   9   0  96  96  24  24  24  24   3
C |   0   0   0  96  24  24   0   0   0   0   0   0   0   0   0   0  84   9  24   3  24  24   0  24  70   0  24  24  24  24  24  24   3   0   7  96   0   0  24  24  24  24   6
G |   0  96   0   0  24  24  96  96  96   0   0   0   0   0   0  96   3   7  24  84  24  24   0  24   7  96  24  24  24  24  24  24   3  96   7   0   0   0  24  24  24  24   3
T |   0   0  96   0  24  24   0   0   0  96   0   0  96   0   0   0   3   7  24   3  24  24  96  24   8   0  24  24  24  24  24  24  87   0  73   0   0   0  24  24  24  24  84

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updated Wed Sep 11 18:56:42 2024