7ye2_ACDF : 3D-footprint complex

Interface of input file ?

structure name	THE CRYO-EM STRUCTURE OF C. CRESCENTUS GCRA-TACDOWN
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;C-terminal domain of RNA polymerase alpha subunit;
reference complex	7ye1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ye2_A interface= rnwnelirpekpqietgadatrkarivaeplergfgvtlgnalrrvllsslqgaavtaiqidgvvhefsslegvredvvdivlnikqlavrmhaegpkrmtlratgpgpvtagqietpadieilnpdhvlctlddgasvrmeftvnngkgyvpadrnrpedapigliavdalyspvkrvayrveptldydklilevetngavtpvdavayaarilqdqlqifitfenpallkkvdelelsvrsanclkndnivyigdliqkteaemlrtpnfgrkslneikevlagmglhlgmdvpnwppeniedl > 7ye2_C interface=65,147,155,186,187,203,205,374,425,431,457,460,476,484,488,518,521,522,526,527,1235, qsftgkkrirksfgripeavqmpnlievqrssyeqflqretrpglrrdegveavfksvfpikdfNeravleyvsyefeepkydveeciqrdmtfaaplkvklrlivfeteeetgarsvkdikeqdvymgdiplmtdkgtfivngteRvivsqmhRspgvffdhdkgkthasgkllfaarvipyrgSWldfefdakdivyvriDrRrklpattflyalgmdgeeilttfydvvpfekrsggwatpykperwrgvkpefplvdadtgeevapagtkitarqakkfadgglktlltgrylardaeiyaeagdeldvtsiqaladtvgaymrntlrvdknairedalfdiyrvmrpgepptveaaeamfkslffdaeRydlssvgrvkmnmrleqdvsdevrilrkedvlavlkvlvglrdgrgeiddIdnlgnRrvrsvgellenqyrvgllrmeraikErmSsvdidtvmphdlinaKpaaaavrEffgSsqlsqfmdqtnplseithkrrlsalgpggLtrERagfEVrdvhpthygricpietpegpniglinslatharvnkygfiespyrrvkdgkpqdevvymsameeskhviaqsnikvaegeivedlvpgringeptllqketvdlmdvsprqvvsvaaalipflenddanralmgsnmqrqavplvqsdaplvgtgmeavvardsgavviakrtgvveqidgtrivirateetdparsgvdiyrmskfqrsnqstcinqrplvkvgdrivagdiiadgpstelgelalgrnalvafmpwngynfedsiliserivrddvftsihieefevmardtklgpeeitrdipnvgeealrnldeagivaigaevqpgdilvgkvtpkgespmtpeekllraifgekasdvrdtslrlppgvagtivdvrvfnrhgvdkderalaieraeidrlgkdrddefailnrnisgrlkelligklaqvasglwwqialedekamgeleslrrlfdenrkrldrrfedkvdklqrgdelppgvmkmvkvfvavkrklqpgdkmagrhgnkgvisrilpiedmpfladgthvdvvlnplgvpsrmnvgqifethlgwacanlgkqitnlledwqqggqkqalverlteelpdteeglvelarnlgkgvpiatpvfdgarmddieghlemagvnksgqsilfdgltgeqfkrpvtvgyiymlklhhlvddkiharsigpyslvtqqplggkaqfggqrfgeMevwaleaygaaytlqemltvksddvagrtkvyesivrgddtfeagipesfnvlvkemrslglnvelen > 7ye2_D interface=105,196,243,303,304,306,318,336,410,411,413,764, tfdqirislaspekirswsfgeikkpetinyrtfkperdglfcarifgptkdyeclcgkykrmkykgiicekcgvevtlarvrrermghielaspvahiwflksLpsriammldmplkdiervlyfeyyivtepgplkqhqllseddymraqeeygddsftaeigaeaiqnllkaidlekeaerlreelsgtvsdMkqkkfskrlkileafqesgnrpewmvltvvpvippelrplvpldggRfatsdlndlyrrvinrnnrlkrlielrapdiiirnekrmlqesvdalfdngrrgrvitgANkRplksladmlkgKqgrfrqnllgkrvdysgRsvivvgpelklhecglpkkmalelfkpfiyarldakglsgtvkqskrmvereqpqvwdileevirehpvllnrAPtLhrlgiqafepkliegkaiqlhplvcaafnadfdgdqmavhvplsleaqlearvlmmstnnilspangrpiivpsqdivlglyylsvardgepgegkifadlgeieaamdagvvslhakikarhtemtpegvllrkvidttpgrmkiaallphhpqighrliekaltkkeignlidivyrhcgqkatvifadkvmglgfkeaakagisfgkddiiipvrktaiveetrklaeeyeqqyitkgekynkvvdawakatdrvademmaelqmkhkdengrekeinaiymmahsgargsqaqmkqlggmrglmakpsgeiietpivsnfkegltvqeyfnsthgarkgladtalkTansgyltrrlvdvaqdciiveedcgttkgitlravveggdvlvslgsrvlgrftaedvkdpgtgelvvpadtyideniadaieaavvqsvkvrsvltceakigvcgacygrdlargtpvnigeavgviaaqsigepgtqltitgglprvaelfearrpkdcaviaemdgrvefgkdyknkrrikitpdkhiavhdgdyitkgeyiidgnpdphdilrilgvealanflvdeiqevyrlqgvpindkhietivrqmlqkveilepgdtglikgdhldkpefdkeqekaiarpavtqpvllgitkaslqtksfisaasfqettrvlteasvhgktdtleglkenvivgrlipagtgsylrslqrvaakrdeqlaqqre > 7ye2_F interface=7,8,11,20,25,268,271,273,277,281,282,286,304,315,318,319,321,322,326,333,339,340,346,349,350,353,388,394,396, drtddpVRmyLremgsvelLsregEiaiakrieagrdtmirglcesaltfeaimvwreelgtgrillrevidlegtyaaivsamegelregvmaildaiasefeafrklqdklvgsrlkgedlsdadrkayeglsatiiqhlktlklnnnriealveqlyainkrliglegrllrladsygisrgeflkayfgselnptwseqvkamgvrwtkfvendsqsvtdirseiaalatetgvpiddyrrivqtvqkgerearqakkemveaNlrLvIsiaKkytNRglqFldliqegniglmkavdkFeyrrgykfstYatWWiRQaitRsiadqaRtiripVHmietiNkiVRtsRqmlheigreptpeelaeklamplekvrkvlkiakEpisleTpIgdeedshlgdfiedknailpidaaiqsnlretttrvlasltpreervlrmrfgigmntdhtleevgqqfsvtrerirqieakalrklkhpsrsrklrsfld
interface signature	/NRRSWDRRIRESKESLEREVM/LMRANRKRAPLT/VRLLENLIKNRFFYWWRQRRVHNVRRETI

Estimated binding specificities ?

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# IC=18.665 IC/col=0.933 n_of_columns=20

specificity:

A |   0   0   0  96  24  24   0   0  67  96   0   0   0   0  96  96  24  67  24   9
C |  96   0   0   0  24  24  96   0   9   0   0   0   0   0   0   0  24   9  24   9
G |   0   0   0   0  24  24   0  96  11   0  96  96   0   0   0   0  24  11  24  69
T |   0  96  96   0  24  24   0   0   9   0   0   0  96  96   0   0  24   9  24   9

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updated Sun Dec 17 17:35:46 2023