8a1c_A : 3D-footprint complex

structure name	TRAI TRANS-ESTERASE DOMAIN FROM PKM101 (DNA BOUND)
reference	Berntsson et al. 'To ? ? ?
experiment	X-ray (resolution=2.10, R-factor=0.227)
structural superfamily	Origin of replication-binding domain, RBD-like;
sequence family	TrwC relaxase;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8a1c_A interface=1,2,3,5,76,78,84,86,179,180,183,186,187,194,214,216,237,248,253,254,256,257,260,264, MLDiTtitrqnvtsvvgyysdakddyyskdsftswqgtgaealglsgdvesarfkellvgeidtfthmqrhvdakKeRlgydlTfSapkgvsmqalihgdktiieahekavaaavreaeklaqarttrqgksvtqntnnlvvatfrhetsraldpdlhthafvmnmtqredgqwralkNDelMrnKMhlgdvyKqelaleltkagyelrynskNnTfdmahfsdeqirafsrrseqIekglaamgltRetadAQtKSrvSmatRekehsreeihqewasraktlgidfdnrewqgalevlf
interface signature	MLDTKRTSNDMKMKNTIRAQKSSR

Estimated binding specificities ?

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# IC=13.325 IC/col=1.333 n_of_columns=10

specificity:

A |   0   0   0   0  96   0   0   0   0   0
C |  96   0   0   0   0   0   0   0   0   0
G |   0  96   0   0   0  96  96   0  96   0
T |   0   0  96  96   0   0   0  96   0  96

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updated Wed Dec 18 15:25:37 2024