8amd_ABFG : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE RECA PRESYNAPTIC FILAMENT FROM S.PNEUMONIAE
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;RecA protein, C-terminal domain;
reference complex	8amd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8amd_A interface=169,174,202,204, eeiskkfgaerekalndalkliekdfgkgsimrlgeraeqkvqvmssgslaldialgsggypkgriieiygpessgkttvalhavaqaqkeggiaafidaehaldpayaaalgvnidelllsqpdsgeqgleiagklidsgavdlvvvdsvaalvpraeidgdigdshVglqaRmmsqamrklgasinktktiaifinqlrEkVgvmfgnpettpggralkfyasvrldvrgntqikgtgdqketnvgketkikvvknkvappfkeavveimygegisktgellkiasdldiikkagawysykdekigqgsenakkylaehpeifdeidkqvr > 8amd_B interface=169,174,202,203,204, eeiskkfgaerekalndalkliekdfgkgsimrlgeraeqkvqvmssgslaldialgsggypkgriieiygpessgkttvalhavaqaqkeggiaafidaehaldpayaaalgvnidelllsqpdsgeqgleiagklidsgavdlvvvdsvaalvpraeidgdigdshVglqaRmmsqamrklgasinktktiaifinqlrEKVgvmfgnpettpggralkfyasvrldvrgntqikgtgdqketnvgketkikvvknkvappfkeavveimygegisktgellkiasdldiikkagawysykdekigqgsenakkylaehpeifdeidkqvr > 8amd_F interface=169,202,204, eeiskkfgaerekalndalkliekdfgkgsimrlgeraeqkvqvmssgslaldialgsggypkgriieiygpessgkttvalhavaqaqkeggiaafidaehaldpayaaalgvnidelllsqpdsgeqgleiagklidsgavdlvvvdsvaalvpraeidgdigdshVglqarmmsqamrklgasinktktiaifinqlrEkVgvmfgnpettpggralkfyasvrldvrgntqikgtgdqketnvgketkikvvknkvappfkeavveimygegisktgellkiasdldiikkagawysykdekigqgsenakkylaehpeifdeidkqvr > 8amd_G interface=202,204, eeiskkfgaerekalndalkliekdfgkgsimrlgeraeqkvqvmssgslaldialgsggypkgriieiygpessgkttvalhavaqaqkeggiaafidaehaldpayaaalgvnidelllsqpdsgeqgleiagklidsgavdlvvvdsvaalvpraeidgdigdshvglqarmmsqamrklgasinktktiaifinqlrEkVgvmfgnpettpggralkfyasvrldvrgntqikgtgdqketnvgketkikvvknkvappfkeavveimygegisktgellkiasdldiikkagawysykdekigqgsenakkylaehpeifdeidkqvr
interface signature	VREV/VREKV/VEV/EV

Estimated binding specificities ?

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# IC=11.096 IC/col=1.009 n_of_columns=11

specificity:

A |   0   0  13   0   0  13   0   0  24   0   0
C |   0   0  13   0   0  13   0   0  24   0   0
G |   0   0  16   0   0  16   0   0  24   0   0
T |  96  96  54  96  96  54  96  96  24  96  96

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updated Sun Dec 17 19:04:46 2023