8b1t_BCD : 3D-footprint complex

Interface of input file ?

structure name	RECBCD-DNA IN COMPLEX WITH THE PHAGE PROTEIN ABC2
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
reference complex	6sjf_B 6sjf_C 6sjf_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b1t_B interface=251,418,419,555,556,738,757,820, aetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveellvvtfteaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaerqmdeaavftihgfcqrmlnlnafesgmlfeqqliedesllryqacadfwrrhcyplpreiaqvvfetwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrdavgeldaliessgidrRkfnrsnqakwidkisawaeeetnsyqlpeslekfsqrfledrtkaggetprhplfeaidqllaeplsirdlvitralaeiretvarekrrrgelgfddmlsrldsalrsesgevlaaairtrfpvamidefqdtdpqqyrifrriwhhqpetallligdpkqaiyaFRgadiftymkarsevhahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvksagknqalrfvfkgetqpamkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeallmngddarpvrasdisvlvRSrqeaaqvrdaltlleipsvylsnrdsvfetleaqemlwllqavmtperentlrsalatsmmglnaldietlnndehawdvvveefdgyrqiwrkrgvmpmlralmsarniaenllataggerrltdilhisellqeagtqlesehalvrwlsqhilepdsnassqqmrlesdkhlvqivtiHkskgleyplvwlpfitnfRvqeqafyhdrhsfeavldlnaapesvdlaeaerlaedlrllyvaltrsvwhcslgvaplvrrRgdkkgdtdvhqsalgrllqkgepqdaaglrtciealcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgdnwrvtsysglqqtphqfprgaspgtflhslfedldftqpvdpnwvreklelggfesqwepvltewitavlqaplnetgvslsqlsarnkqvemefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgfidlvfrhegryyllayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhriadydyehhfggviylflrgvdkehpqqgiyttrpnaglialmdemfag > 8b1t_C interface=817,834,1037,1038,1039,1040,1041, mlrvyhsnrldvlealmefivererlddpfepemilvqstgmaqwlqmtlsqkfgiaanidfplpasfiwdmfvrvlpeipkesafnkqsmswklmtllpqlleredftllrhyltddsdkrklfqlsskaadlfdqylvyrpdwlaqwetghlveglgeaqawqaplwkalveythqlgqprwhranlyqrfietlesattcppglpsrvficgisalppvylqalqalgkhieihllftnpcryywgdikdvgnpllaswgklgrdyiyllsdlessqeldafvdvtpdnllhniqsdilelenravagvnieefsrsdnkrpldpldssitfhvchspqrevevlhdrllamleedptltprdiivmvadidsyspfiqavfgsapadrylpyaisdrrarqshpvleafisllslpdsrfvsedvlalldvpvlaarfditeeglrylrqwvnesgirwgidddnvrelelpatgqhtwrfgltrmllgyamesaqgewqsvlpydessgliaelvghlasllmqlniwrrglaqerpleewlpvcrdmlnafflpdaeteaamtlieqqwqaiiaeglgaqygdavplsllrdelaqrldqerisqrflagpvnictlmpmrsipfkvvcllgmndgvyprqlaplgfdlmsqkpkrgdrsrrdddrylflealisaqqklyisyigrsiqdnserfpsvlvqelidyigqshylpgdealncdesearvkahltclhtrmpfdpqnyqpgerqsyarewlpaasqagkahsefvqplpftlpetvpletlqrfwahpvraffqmrlqvnfRtedseipdtepfilegLsryqinqqllnalveqddaerlfrrfraagdlpygafgeifwetqcqemqqladrviacrqpgqsmeidlacngvqitgwlpqvqpdgllrwrpsllsvaqgmqlwlehlvycasggngesrlflrkdgewrfpplaaeqalhylsqliegyregmsapllvlpesggawlktcydaqndamldddstlqkartkflqayegNMMVRgegddiwyqrlwrqltpetmeaiveqsqrfllplfrfnq > 8b1t_D interface=13,236,242,243,299,534,554,555, klqkqlleavehKqlrpldvqfaltvagdehpavtlaaallshdageghvclplsrlenhpllatcvseigelqnweecllasqavsrgdeptpmilcgdrlylnrmwcnertvarffnevnhaievdeallaqtldklfpvsdeinwqkvaaavaltrrisvisggpgtgktttvakllaaliqmadgercrirlaaptgkaaarlteslgkalrqlpltdeqkkripedastlHrllgaQPgsqrlrhhagnplhldvlvvdeasmidlpmmsrlidalpdharviflgdrdqlasVeagavlgdicayanagftaerarqlsrltgthvpagtgteaaslrdslcllqksyrfgsdsgigqlaaainrgdktavktvfqqdftdiekrllqsgedyiamleealagygryldllqaraepdliiqafneyqllcalregpfgvaglnerieqfmqqkrkihrhphsrwyegrpvmiarndsalglfngdigialdrgqgtrvwfampdgniksvqpsrlpehettwamtvHksqgsefdhaalilpsqrtPVvtrelvytavtrarrrlslyaderilsaaiatrterrsglaalfss
interface signature	RFRRSHRR/RLNMMVR/KHQPVHPV

Estimated binding specificities ?

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# IC=24.926 IC/col=0.489 n_of_columns=51

specificity:

A |   0   0   0  24   0   0   0   0  16   0   0   0   0  24  24  96  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   8  24  24  24  24  24  24  24  16  96  24  96   0   0   0
C |   0   0   0  24   0   0   0   0  16   0   0   0   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   8  24  24  24  24  24  24  24  16   0  24   0   0   0   0
G |   0   0   0  24   0   0   0   0   8   0   0   0   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  72  24  24  24  24  24  24  24  16   0  24   0   0   0   0
T |  96  96  96  24  96  96  96  96  56  96  96  96  96  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   8  24  24  24  24  24  24  24  48   0  24   0  96  96  96

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updated Wed Sep 11 20:31:18 2024