8bd5_AEFGHIJQ : 3D-footprint complex

structure name	CAS12K-SGRNA-DSDNA-S15-TNIQ-TNSC TRANSPOSON RECRUITMENT COMPLEX
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	7m99_A 7n3p_A 8rdu_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8bd5_A interface=3,56,78,81,85,89,93,97,103,110,143,144,145,148,152,171,172,235,238,239,255,256,275,320,345,370,387,390,471,475,521,528,531,535,536,539,541,546,547,550,555,581,584, asQitiqarlisfesnrqqlwklmadlntplinellcqlgqhpdfekwqqkgklpStvvsqlcqplktdprfagqpsRlyMsaiHivdYiykSwlaIqkrlqQqldgktRwlemlnsdaelvelsgdtleairvkaaeilaiLSKtlFdayQetediksrsaisyllkngCKltdkeedsekfakrrrqveiqiqrlteklisrmpkgrdltnakwletlltatttvaednaqaKrwQDilltrssslpfplvfETnedmvwsknqkgrlcvhfNglsdlifevycgnrqlhwfqrfledqqtkrksknqhssglftlrNghlvwlegegkgepwnlhhltlycCvdnrlwteegteivrqekadeitkFitnmkkksdlsdtqqaLiqRkqstltrinnsferpsqplyqgqshilvgvslglekpatvavvdaiankvlayrsikqllgdnyellnrqrrqqqylsheRhkaQknfspnqfgaselgqhidrllakaivalartykagsivlpklgdmRevvqseIqaIaeqKFpgYiEgqqkYAkqYrvnvHrwsygrliqsiqskaaqtgivieegKqpIrgsphdkakelalsaynlrlt > 8bd5_E interface=134, ddewlqaeiarlkgksivplqqvktlhdwldgkrkarkscrvvgesrtgktvacdayryrhkpqqeagrpptvpvvyirphqkcgpkdlfkkiteylkyrvtkgtvsdfrdrtievlkgcgvemliideadrlKpetfadvrdiaedlgiavvlvgtdrldavikrdeqvlerfrahlrfgklsgedfkntvemweqmvlklpvssnlkskemlriltsategyigrldeilreaairslsrglkkidkavlqevakeyk > 8bd5_F interface= ddewlqaeiarlkgksivplqqvktlhdwldgkrkarkscrvvgesrtgktvacdayryrhkpqqeagrpptvpvvyirphqkcgpkdlfkkiteylkyrvtkgtvsdfrdrtievlkgcgvemliideadrlKpetfadvrdiaedlgiavvlvgtdrldavikrdeqvlerfrahlrfgklsgedfkntvemweqmvlklpvssnlkskemlriltsategyigrldeilreaairslsrglkkidkavlqevakeyk > 8bd5_G interface= ddewlqaeiarlkgksivplqqvktlhdwldgkrkarkscrvvgesrtgktvacdayryrhkpqqeagrpptvpvvyirphqkcgpkdlfkkiteylkyrvtkgtvsdfrdrtievlkgcgvemliideadrlKpetfadvrdiaedlgiavvlvgtdrldavikrdeqvlerfrahlrfgklsgedfkntvemweqmvlklpvssnlkskemlriltsategyigrldeilreaairslsrglkkidkavlqevakeyk > 8bd5_H interface= ddewlqaeiarlkgksivplqqvktlhdwldgkrkarkscrvvgesrtgktvacdayryrhkpqqeagrpptvpvvyirphqkcgpkdlfkkiteylkyrvtkgtvsdfrdrtievlkgcgvemliideadrlKpetfadvrdiaedlgiavvlvgtdrldavikrdeqvlerfrahlrfgklsgedfkntvemweqmvlklpvssnlkskemlriltsategyigrldeilreaairslsrglkkidkavlqevakeyk > 8bd5_I interface= ddewlqaeiarlkgksivplqqvktlhdwldgkrkarkscrvvgesrtgktvacdayryrhkpqqeagrpptvpvvyirphqkcgpkdlfkkiteylkyrvtkgtvsdfrdrtievlkgcgvemliideadrlKpetfadvrdiaedlgiavvlvgtdrldavikrdeqvlerfrahlrfgklsgedfkntvemweqmvlklpvssnlkskemlriltsategyigrldeilreaairslsrglkkidkavlqevakeyk > 8bd5_J interface= ddewlqaeiarlkgksivplqqvktlhdwldgkrkarkscrvvgesrtgktvacdayryrhkpqqeagrpptvpvvyirphqkcgpkdlfkkiteylkyrvtkgtvsdfrdrtievlkgcgvemliideadrlKpetfadvrdiaedlgiavvlvgtdrldavikrdeqvlerfrahlrfgklsgedfkntvemweqmvlklpvssnlkskemlriltsategyigrldeilreaairslsrglkkidkavlqevakeyk > 8bd5_Q interface=32,42,46,51,53, vkpwlflikpyegeslshflgrfrranhlsaSglgtlagigAivaRwerfHfNprpsqqeleaiasvvevdaqrlaqmlppagvgmqhepirlcgacyaespchriewqyksvwkcdrhqlkilakcpncqapfkmpalwedgcchrcrmpfaemaklqkv
interface signature	QSRMHYSIQRLSKFQCKKQDETNNCFLRRQRIIKFYEYAYHKI/K/K/K/K/K/K/SARHN

Estimated binding specificities ?

contact

# IC=24.488 IC/col=1.065 n_of_columns=23

specificity:

A |   0   0   0  96   5   0  96  96  96   0   0  96   5  24  10  24   5   0  96  96   0   0   5
C |  96   0   0   0   5   0   0   0   0   0   0   0  69  24  10  24   5  96   0   0  96  96   5
G |   0   0   0   0   6   0   0   0   0   0  96   0  10  24  10  24   5   0   0   0   0   0   5
T |   0  96  96   0  80  96   0   0   0  96   0   0  12  24  66  24  81   0   0   0   0   0  81

scan!

home
updated Wed Sep 11 20:53:29 2024