8br2_ABCDEF : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF THE POST-SYNAPTIC RAD51 NUCLEOPROTEIN FILAMENT IN THE PRESENCE OF ATP AND CA2+
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Rad51 N-terminal domain-like;
reference complex	7c9a_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8br2_A interface=215,218,219,250,251,253,254, gpqpisrleqcginandvkkleeagfhtveavayapkkelinikgiseakadkilaeaaklvpmgfttatefhqrrseiiqittgskeldkllqggietgsitemfgefrtgktqichtlavtcqlpidrgggegkamyidtegtfrperllavaeryglsgsdvldnvayarafntdhqtqllyqasammvesryallivdsatalyrtdysgRgeLSarqmhlarflrmllrladefgvavvitnqvVAqVDpkkpiggniiahasttrlylrkgrgetrickiydspclpeaeamfainadgvgdakd > 8br2_B interface=215,218,219,250,251,253, gpqpisrleqcginandvkkleeagfhtveavayapkkelinikgiseakadkilaeaaklvpmgfttatefhqrrseiiqittgskeldkllqggietgsitemfgefrtgktqichtlavtcqlpidrgggegkamyidtegtfrperllavaeryglsgsdvldnvayarafntdhqtqllyqasammvesryallivdsatalyrtdysgRgeLSarqmhlarflrmllrladefgvavvitnqvVAqVdpkkpiggniiahasttrlylrkgrgetrickiydspclpeaeamfainadgvgdakd > 8br2_C interface=215,218,219,250,251,253,254, gpqpisrleqcginandvkkleeagfhtveavayapkkelinikgiseakadkilaeaaklvpmgfttatefhqrrseiiqittgskeldkllqggietgsitemfgefrtgktqichtlavtcqlpidrgggegkamyidtegtfrperllavaeryglsgsdvldnvayarafntdhqtqllyqasammvesryallivdsatalyrtdysgRgeLSarqmhlarflrmllrladefgvavvitnqvVAqVDpkkpiggniiahasttrlylrkgrgetrickiydspclpeaeamfainadgvgdakd > 8br2_D interface=215,218,219,250,251,253,254, gpqpisrleqcginandvkkleeagfhtveavayapkkelinikgiseakadkilaeaaklvpmgfttatefhqrrseiiqittgskeldkllqggietgsitemfgefrtgktqichtlavtcqlpidrgggegkamyidtegtfrperllavaeryglsgsdvldnvayarafntdhqtqllyqasammvesryallivdsatalyrtdysgRgeLSarqmhlarflrmllrladefgvavvitnqvVAqVDpkkpiggniiahasttrlylrkgrgetrickiydspclpeaeamfainadgvgdakd > 8br2_E interface=215,218,219,250,251,253,254, gpqpisrleqcginandvkkleeagfhtveavayapkkelinikgiseakadkilaeaaklvpmgfttatefhqrrseiiqittgskeldkllqggietgsitemfgefrtgktqichtlavtcqlpidrgggegkamyidtegtfrperllavaeryglsgsdvldnvayarafntdhqtqllyqasammvesryallivdsatalyrtdysgRgeLSarqmhlarflrmllrladefgvavvitnqvVAqVDpkkpiggniiahasttrlylrkgrgetrickiydspclpeaeamfainadgvgdakd > 8br2_F interface=215,218,219,250,251,253,254, gpqpisrleqcginandvkkleeagfhtveavayapkkelinikgiseakadkilaeaaklvpmgfttatefhqrrseiiqittgskeldkllqggietgsitemfgefrtgktqichtlavtcqlpidrgggegkamyidtegtfrperllavaeryglsgsdvldnvayarafntdhqtqllyqasammvesryallivdsatalyrtdysgRgeLSarqmhlarflrmllrladefgvavvitnqvVAqVDpkkpiggniiahasttrlylrkgrgetrickiydspclpeaeamfainadgvgdakd
interface signature	RLSVAVD/RLSVAV/RLSVAVD/RLSVAVD/RLSVAVD/RLSVAVD

Estimated binding specificities ?

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# IC=22.070 IC/col=1.103 n_of_columns=20

specificity:

A |   0   0  24  96   0   6   0   0   6  96   0   6   0  96   6   0   0   6   0  96
C |   0  96  24   0   0  78   0  96   6   0   0   6  96   0  78  96   0  78  96   0
G |  96   0  24   0  96   6   0   0  78   0   0  78   0   0   6   0   0   6   0   0
T |   0   0  24   0   0   6  96   0   6   0  96   6   0   0   6   0  96   6   0   0

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updated Sun Dec 15 22:46:08 2024