8btg_ABCD : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE BACTERIAL REPLICATION ORIGIN OPENING BASAL UNWINDING SYSTEM
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;TrpR-like;
reference complex	8btg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8btg_A interface=81,82,85,86,90,94,120,301,302,303,304,306,307, nmlnpkytfdtfvigsgnrfahaaslavaeapakaynplfiyggvglgkthlmhaighyvidhnpsakvvylssekftneFInsIRdnkAvdfRnryrnvdvlliddiqflagkeqtqeEffhtfntlheeskqivissdrppkeiptledrlrsrfewglitditppdletriailrkkakaegldipnevmlyianqidsnirelegalirvvaysslinkdinadlaaealkdskpkvitikeiqrvvgqqfnikledfkakkrtksvafprqiamylsremtdsslpkigeefggrDHTTvIHahekisklladdeqlqqhvkeikeqlk > 8btg_B interface=302,303,304,305,308, nmlnpkytfdtfvigsgnrfahaaslavaeapakaynplfiyggvglgkthlmhaighyvidhnpsakvvylssekftnefinsirdnkavdfrnryrnvdvlliddiqflagkeqtqeeffhtfntlheeskqivissdrppkeiptledrlrsrfewglitditppdletriailrkkakaegldipnevmlyianqidsnirelegalirvvaysslinkdinadlaaealkdiskpkvitikeiqrvvgqqfnikledfkakkrtksvafprqiamylsremtdsslpkigeefggrDHTTviHahekisklladdeqlqqhvkeikeqlk > 8btg_C interface=319,320,321, nmlnpkytfdtfvigsgnrfahaaslavaeapakaynplfiyggvglgkthlmhaighyvidhnpsakvvylssekftnefinsirdnkavdfrnryrnvdvlliddiqflagkeqtqeeffhtfntlheeskqivissdrppkeiptledrlrsrfewglitditppdletriailrkkakaegldipnevmlyianqidsnirelegalirvvaysslinkdinadlaaealkdiipkvitikeiqrvvgqqfnikledfkakkrtksvafprqiamylsremtdsslpkigeefggrdhttvihahekisklladDEQlqqhvkeikeqlk > 8btg_D interface= nmlnpkytfdtfvigsgnrfahaaslavaeapakaynplfiyggvglgkthlmhaighyvidhnpsakvvylssekftnefinsirdnkavdfrnryrnvdvlliddiqflagkeqtqeeffhtfntlheeskqivissdrppkeiptledrlrsrfewglitditppdletriailrkkakaegldipnevmlyianqidsnirelegalirvvaysslinkdinadlaaealkdiipkvitikeiqrvvgqqfnikledfkakkrtksvafprqiamylsremtdsslpkigeefggrdhttvihahekisklladDEQlqqhvkeikeqlk
interface signature	FIIRAREDHTTIH/DHTTH/DEQ/DEQ

Estimated binding specificities ?

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# IC=9.589 IC/col=0.564 n_of_columns=17

specificity:

A |   1  56   3  96  24  24  13   0   0  70   2  33  24  24  21  14   0
C |  92  14  85   0  24  24  14  96  96   8  88  21  24  24  33  54  96
G |   2  13   3   0  24  24  13   0   0   8   4  21  24  24  21  14   0
T |   1  13   5   0  24  24  56   0   0  10   2  21  24  24  21  14   0

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updated Sun Dec 15 22:47:59 2024