8clj_AC : 3D-footprint complex

structure name	TFIIIC TAUB-DNA DIMER
experiment	NMR
structural superfamily	WD40 repeat-like;
reference complex	8cli_A 8cli_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8clj_A interface=206,210,211,237,367,370,374,391,392,481,483,487, mdaleslldevalegldglclpalwsrletrvppfplplepctqeflwralathpgisfyeeprerpdlqlqdryeeidletgilesrrdpvaledvypihmilenkdgiqgscryfkerknitndirtkslqprctmveafdrwgkkliivasqamryraligqegdpdlklpdfsycilerlgrsrwqgelqrdlhttafkvdAgklHYhrkilnknglitmqshvirlptgaqQhsillllnrfhvdrrskydilmeklsvmlstrtnhietlgklreelglcertfkrlyqymlnaglakvvslrlqeihvmvrclkllktvppvdivferdmltqtydlierrgtkgisqaeirvamnvgkLeaRmlcRllqrfkvvkgfmedegRQrttkyiscvfaeesdlsrqyqrekarsellttvslaavieevretyrllkrrnliieavtnlrlieslftiqkmimdqekqegvstkcCkKsivRlvrnlseegllrlyrttviqdgikkkvdlvvhpsmdqndplvrsaieqvrfrisn > 8clj_C interface=454, hcrgmapnglpnhimapvwkclhltkdfreqkhsywefaewiplawkwhllseleaapylpqeeksplfsvqreglpedgtlyrinrfssitahperwdvsfftggplwaldwcpvpegagasqyvalfsspdmnethplsqlhsgpgllqlwglgtlqqescpgnrahfvygiacdngciwdlkfcpsgawelpgtprkapllprlgllalacsdgkvllfslphpeallaqqppdavkpaiykvqcvatlqvgsmqatdpsecgqclslawmptrphqhlaagyyngmvvfwnlptnsplqrirlsdgslklypfqcflahdqavrtlqwckanshflvsagsdrkikfwdlrrpyepinsikrflstelawllpyngvtvaqdncyasyglcgihyidagylgfkayftaprkgtvwslsgsdwlgtiaagdisgeliaailpdmalnpiNvkrpverrfpiykadlipyrtytetvnhhyllfqdtdlgsfhdllrrepmlrmqegeghsqlcldrlqleaihkvrfspnldsygwlvsggqsglvrihfvrglasplghrmqlesrahfnamfq
interface signature	AHYQLRRRQCKR/N

Estimated binding specificities ?

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# IC=11.018 IC/col=1.002 n_of_columns=11

specificity:

A |   1   0  81   5  11   0   0  96  96   1  10
C |   5   0   5  80  20  96   0   0   0  90  70
G |  85  96   5   5   5   0  96   0   0   0  11
T |   5   0   5   6  60   0   0   0   0   5   5

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updated Sun Dec 15 22:57:07 2024