8clj_FH : 3D-footprint complex

structure name	TFIIIC TAUB-DNA DIMER
experiment	NMR
structural superfamily	WD40 repeat-like;
reference complex	8cli_A 8cli_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8clj_F interface=206,210,211,237,295,367,370,374,391,392,481,483,487, mdaleslldevalegldglclpalwsrletrvppfplplepctqeflwralathpgisfyeeprerpdlqlqdryeeidletgilesrrdpvaledvypihmilenkdgiqgscryfkerknitndirtkslqprctmveafdrwgkkliivasqamryraligqegdpdlklpdfsycilerlgrsrwqgelqrdlhttafkvdAgklHYhrkilnknglitmqshvirlptgaqQhsillllnrfhvdrrskydilmeklsvmlstrtnhietlgklreelglcertfkrlyQymlnaglakvvslrlqeihvmvrclkllktvppvdivferdmltqtydlierrgtkgisqaeirvamnvgkLeaRmlcRllqrfkvvkgfmedegRQrttkyiscvfaeesdlsrqyqrekarsellttvslaavieevretyrllkrrnliieavtnlrlieslftiqkmimdqekqegvstkcCkKsivRlvrnlseegllrlyrttviqdgikkkvdlvvhpsmdqndplvrsaieqvrfrisn > 8clj_H interface=454, hcrgmapnglpnhimapvwkclhltkdfreqkhsywefaewiplawkwhllseleaapylpqeeksplfsvqreglpedgtlyrinrfssitahperwdvsfftggplwaldwcpvpegagasqyvalfsspdmnethplsqlhsgpgllqlwglgtlqqescpgnrahfvygiacdngciwdlkfcpsgawelpgtprkapllprlgllalacsdgkvllfslphpeallaqqppdavkpaiykvqcvatlqvgsmqatdpsecgqclslawmptrphqhlaagyyngmvvfwnlptnsplqrirlsdgslklypfqcflahdqavrtlqwckanshflvsagsdrkikfwdlrrpyepinsikrflstelawllpyngvtvaqdncyasyglcgihyidagylgfkayftaprkgtvwslsgsdwlgtiaagdisgeliaailpdmalnpiNvkrpverrfpiykadlipyrtytetvnhhyllfqdtdlgsfhdllrrepmlrmqegeghsqlcldrlqleaihkvrfspnldsygwlvsggqsglvrihfvrglasplghrmqlesrahfnamfq
interface signature	AHYQQLRRRQCKR/N

Estimated binding specificities ?

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# IC=7.949 IC/col=0.795 n_of_columns=10

specificity:

A |  13  69   0   0   4  50   4  24  14   0
C |   0   0   0  86   6  22  13  24  82  96
G |  83   0   0   0  86  15  68  24   0   0
T |   0  27  96  10   0   9  11  24   0   0

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updated Sun Dec 15 22:58:18 2024