8clj_FH : 3D-footprint complex

structure name	TFIIIC TAUB-DNA DIMER
experiment	NMR
structural superfamily	WD40 repeat-like;
reference complex	8cli_A 8cli_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8clj_F interface=206,210,211,237,295,367,370,374,391,392,481,483,487, mdaleslldevalegldglclpalwsrletrvppfplplepctqeflwralathpgisfyeeprerpdlqlqdryeeidletgilesrrdpvaledvypihmilenkdgiqgscryfkerknitndirtkslqprctmveafdrwgkkliivasqamryraligqegdpdlklpdfsycilerlgrsrwqgelqrdlhttafkvdAgklHYhrkilnknglitmqshvirlptgaqQhsillllnrfhvdrrskydilmeklsvmlstrtnhietlgklreelglcertfkrlyQymlnaglakvvslrlqeihvmvrclkllktvppvdivferdmltqtydlierrgtkgisqaeirvamnvgkLeaRmlcRllqrfkvvkgfmedegRQrttkyiscvfaeesdlsrqyqrekarsellttvslaavieevretyrllkrrnliieavtnlrlieslftiqkmimdqekqegvstkcCkKsivRlvrnlseegllrlyrttviqdgikkkvdlvvhpsmdqndplvrsaieqvrfrisn > 8clj_H interface=454, hcrgmapnglpnhimapvwkclhltkdfreqkhsywefaewiplawkwhllseleaapylpqeeksplfsvqreglpedgtlyrinrfssitahperwdvsfftggplwaldwcpvpegagasqyvalfsspdmnethplsqlhsgpgllqlwglgtlqqescpgnrahfvygiacdngciwdlkfcpsgawelpgtprkapllprlgllalacsdgkvllfslphpeallaqqppdavkpaiykvqcvatlqvgsmqatdpsecgqclslawmptrphqhlaagyyngmvvfwnlptnsplqrirlsdgslklypfqcflahdqavrtlqwckanshflvsagsdrkikfwdlrrpyepinsikrflstelawllpyngvtvaqdncyasyglcgihyidagylgfkayftaprkgtvwslsgsdwlgtiaagdisgeliaailpdmalnpiNvkrpverrfpiykadlipyrtytetvnhhyllfqdtdlgsfhdllrrepmlrmqegeghsqlcldrlqleaihkvrfspnldsygwlvsggqsglvrihfvrglasplghrmqlesrahfnamfq
interface signature	AHYQQLRRRQCKR/N

Estimated binding specificities ?

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# IC=8.059 IC/col=0.806 n_of_columns=10

specificity:

A |   0   0  24   8  24   0   4  96  32   0
C |   0   0  24  64  20  96   0   0   0  80
G |  96  68  24  20  12   0  92   0   0   0
T |   0  28  24   4  40   0   0   0  64  16

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updated Wed Sep 11 21:35:20 2024