8com_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_A interface=42, rpgtvalreirqfqrstdlllqkapfqrlvrevsgaqkeglRfqssailaaqeatesyivslladtnracihsgrvtiqpkdihlalclrg

  
  --LT--RC--                +-----------------5xm1_A    
                       +----4 
  ------RT--           !    !           +-----7wlr_E    
                   +---7    +-----------2 
  ------RA--       !   !                +-----7xsx_a    
                   !   ! 
  ------RT--       !   +----------------------7lyb_G    
                   !  
  --LT----RG       !                           +8eue_E    
                   !       +-------------------1 
  ------RG--     -10    +--5                   +7k6p_A    
                   !    !  ! 
  ------RG--       !    !  +-------------------5t5k_E    
                   !  +-8 
  RAAANA----       !  ! !               +--------1jfi_B    
                   !  ! ! +-------------3 
  --IT------       +--9 +-6             +--------6r8y_H    
                      !   ! 
  ------RG--          !   +----------------------7e9c_G    
                      ! 
  ------RA--          +-----------------------6t7a_C

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updated Wed Dec 20 01:58:26 2023