Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RT----             +-----------------------------8grq_A    
                        +-10  
  --LC--RT----          !  +-----------------------------8hr1_E    
                        !  
  ------RA----          !                           +--7xsx_a    
                        !                       +---4 
  --------RA--          !                 +-----5   +--6g0l_D    
                        !                 !     ! 
  ------RT----       +-11             +---6     +------8u14_G    
                     !  !             !   ! 
  ------RA----       !  !             !   !           +1zla_C    
                     !  !           +-8   +-----------3 
  ------RA--RA       !  !           ! !               +6a5l_g    
                     !  !           ! ! 
  ------RG----       !  !           ! !                +8txv_G    
                     !  !           ! +----------------1 
  ------RG----     -12  +-----------9                  +5x0y_G    
                     !              ! 
  ------RG----       !              !                 +7e9c_G    
                     !              !  +--------------2 
  ------RG----       !              +--7              +8ox0_C    
                     !                 ! 
  ------RG----       !                 +--------------8jla_C    
                     !  
  RAAANA------       +-----------------------------1jfi_B    
                   

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updated Wed Dec 18 16:37:26 2024