8com_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_A interface=42, rpgtvalreirqfqrstdlllqkapfqrlvrevsgaqkeglRfqssailaaqeatesyivslladtnracihsgrvtiqpkdihlalclrg

  
  --------RT--       +---------------------------6px1_A    
                     !  
  --------RC--       !  +---------------------------7ux9_E    
                     !  !  
  --------RA--     -11  !                        +--7xsx_a    
                     !  !             +----------5 
  --------RG--       !  !             !          !  +8txv_G    
                     !  !             !          +--1 
  --------RG--       !  !         +---6             +8upf_G    
                     +-10         !   ! 
  --------RT--          !         !   !            +8u14_G    
                        !         !   +------------4 
  --------RARA          !    +----8                ! +6a5l_g    
                        !    !    !                +-3 
  ----HGRTRG--          !    !    !                  +8rbx_V    
                        !    !    ! 
  --------RA--          +----9    !                 +7e9c_F    
                             !    +-----------------2 
  --------RG--               !                      +7e9c_G    
                             ! 
  RAAANA------               !     +----------------1jfi_B    
                             +-----7 
  --------RC--                     +----------------7yqk_C

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updated Sat Jan 10 22:49:55 2026