8com_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_A interface=42, rpgtvalreirqfqrstdlllqkapfqrlvrevsgaqkeglRfqssailaaqeatesyivslladtnracihsgrvtiqpkdihlalclrg

  
  ------RT----          +-----------------------------8grq_A    
                     +-11  
  --LC--RT----       !  +-----------------------------8hr1_E    
                     !  
  ------RA----       !                          +--7xsx_a    
                     !                  +-------5 
  --------RA--       !                  !       +--6g0l_D    
                     !            +-----6 
  ------RA----     -12            !     !          +1zla_C    
                     !            !     +----------3 
  ------RG----       !         +--9                +8ox0_C    
                     !         !  ! 
  ------RG----       !         !  !                +8txv_G    
                     !         !  ! +--------------1 
  ------RG----       !         !  +-7              +5x0y_G    
                     +--------10    ! 
  ------RG----                 !    +--------------8jla_C    
                               !  
  RAAANA------                 !   +---------------1jfi_B    
                               !   ! 
  ------RG----                 +---8                 +7e9c_G    
                                   !               +-2 
  ------RT----                     +---------------4 +8u14_G    
                                                   ! 
  ------RA--RA                                     +6a5l_g

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updated Sun Aug 3 23:40:28 2025