Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --------RA--                        +----------------------6t7a_C    
                                    +-3 
  RAAA--NA----                      ! !        +-------------1jfi_B    
                                    ! +--------2 
  --------RG--                 +----4          !    +--------7e9c_G    
                               !    !          +----1 
  --------RA--                 !    !               +--------7xsx_a    
                             +-5    ! 
  --------RT--               ! !    +------------------------7lyb_G    
                           +-6 ! 
  --------RG--             ! ! +-----------------------------7k6p_A    
                         +-7 ! 
  --LT------RG           ! ! +-----------------------------8eue_E    
                       +-8 ! 
  --LT----RC--         ! ! +-----------------------------5xm1_A    
                     +-9 ! 
  ----IT------       ! ! +-----------------------------6r8y_H    
                   -10 ! 
  --------RG--       ! +-----------------------------5t5k_E    
                     !  
  --------RT--       +-----------------------------7wlr_E

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updated Sat Sep 14 09:31:03 2024