3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RA----                                    +1zla_C    
                               +--------------1 
  --RG----                  +--2              +8ox0_C    
                            !  ! 
  --RA--RA              +---3  +--------------6a5l_g    
                        !   ! 
  ----RA--            +-4   +-----------------6g0l_D    
                      ! ! 
  --RG----         +--5 +---------------------5x0y_G    
                   !  ! 
  --RG----       +-6  +-----------------------8jla_C    
                 ! ! 
  --RT----     --7 +--------------------------8grq_A    
                 ! 
  LCRT----       +--------------------------8hr1_E

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updated Sun Aug 3 23:42:07 2025