3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RA--       +-----------------------------7e9c_F    
                 ! 
  ----RARA       !                              +6a5l_g    
                 !               +--------------1 
  ----RC--       !          +----2              +7yqk_C    
               --6          !    ! 
  ----RG--       !     +----3    +--------------8upf_G    
                 !     !    ! 
  HGRTRG--       !   +-4    +-------------------8rbx_V    
                 !   ! ! 
  ----RC--       +---5 +------------------------7ux9_E    
                     ! 
  ----RT--           +-------------------------6px1_A

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updated Sat Jan 10 22:51:52 2026