8com_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_C interface=28, ssrsvkaglifpvgrvgtllrrgqyarRigasgavymaavleyltaellelsvkaaaqqtkktkrltprtvtlavrhdddlgallrnvtmsrggvmp

  
  --------RG--                                       +--7e9c_G    
                                       +-------------3 
  --------RA--                     +---4             +--7xsx_a    
                                   !   ! 
  --------RT--                  +--6   +----------------7lyb_G    
                                !  ! 
  --------RA--            +-----7  +--------------------6t7a_C    
                          !     ! 
  ----IT------          +-9     +-----------------------6r8y_H    
                        ! ! 
  RC----------       +-10 +-----------------------------6uph_D    
                     !  !  
  --------RG--       !  +-----------------------------5t5k_E    
                     !  
  ----------RG     -11                            +8eue_E    
                     !         +------------------2 
  --------RG--       !         !                  ! +7k6p_A    
                     !    +----5                  +-1 
  ----LT--RC--       !    !    !                    +5xm1_A    
                     +----8    ! 
  --------RT--            !    +-------------------7wlr_E    
                          ! 
  --RAAANA----            +------------------------1jfi_B

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updated Wed Dec 20 02:01:50 2023