Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --------RG----          +-----------------------------8jla_C    
                          !  
  --------RT----          !                              +8u14_G    
                          !         +--------------------1 
  --------RG----          !         !                    +8ox0_C    
                          !         !  
  --------RG----       +-12      +-10                      +7e9c_G    
                       !  !      !  !                    +-2 
  --------RG----       !  !      !  !          +---------3 +8txv_G    
                       !  !      !  !          !         ! 
  --------RG----       !  !      !  +----------7         +5x0y_G    
                       !  !      !             ! 
  --------RA----       !  !      !             !        +1zla_C    
                       !  +-----11             +--------5 
  --------RA--RA       !         !                      +6a5l_g    
                       !         !  
  --------RG--RG     -13         !               +------8kcb_A    
                       !         !    +----------6 
  ----------RA--       !         !    !          +------6g0l_D    
                       !         +----9 
  --------RA----       !              !                 +7xsx_a    
                       !              !  +--------------4 
  --------RT----       !              +--8              +8grq_A    
                       !                 ! 
  LC------RT----       !                 +--------------8hr1_E    
                       !  
  --RAAANA------       +-----------------------------1jfi_B    
                     

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updated Wed Dec 18 16:40:23 2024