Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --------RA--RA                                           +6a5l_g    
                                    +----------------------2 
  --------RG----                    !                      +8txv_G    
                                    !  
  --------RG----                    !                      +7e9c_G    
                                    !              +-------1 
  --------RA----             +-----10              !       +1zla_C    
                             !      !  +-----------6 
  --------RT----             !      !  !           !       +8u14_G    
                             !      !  !           +-------3 
  --------RG----             !      !  !                   +5x0y_G    
                             !      +--9 
  --------RG--RG             !         !            +------8kcb_A    
                             !         ! +----------5 
  ----------RA--          +-11         ! !          +------6g0l_D    
                          !  !         +-8 
  --------RA----          !  !           !                 +7xsx_a    
                          !  !           !  +--------------4 
  --------RT----          !  !           +--7              +8grq_A    
                       +-12  !              ! 
  LC------RT----       !  !  !              +--------------8hr1_E    
                       !  !  !  
  --------RG----     -13  !  +-----------------------------8jla_C    
                       !  !  
  --------RG----       !  +-----------------------------8ox0_C    
                       !  
  --RAAANA------       +-----------------------------1jfi_B    
                     

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updated Sun Aug 3 23:43:17 2025