8com_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_C interface=28, ssrsvkaglifpvgrvgtllrrgqyarRigasgavymaavleyltaellelsvkaaaqqtkktkrltprtvtlavrhdddlgallrnvtmsrggvmp

  
  ------RG--           +-----------------------------8txv_G    
                       ! 
  ------RG--         +-3                             +7e9c_G    
                     ! !         +-------------------1 
  ------RT--         ! +---------2                   +8u14_G    
                   +-4           ! 
  ------RA--       ! !           +-------------------7xsx_a    
                 --5 ! 
  RAAANA----       ! +-----------------------------1jfi_B    
                   ! 
  ------RGRG       +-----------------------------8kcb_A

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updated Sat Sep 14 09:32:02 2024