8com_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_H interface=3, rqRkrtwnvyvsrslrsinsqmsmtsrtmkivnsfvndlferiaaeaativrvnrkrtlgarelqtavrlvlpadlakhamaegtkavshass

  
  RC------------                             +------6uph_D    
                                +------------4 
  ----------RT--          +-----7            +------7lyb_G    
                          !     ! 
  RG----IT------          !     +-------------------6r8y_H    
                          !  
  ----RAAANA----       +-10           +-------------1jfi_B    
                       !  !  +--------5 
  ----------RG--       !  !  !        +-------------5t5k_E    
                       !  +--9 
  ----------RA--       !     !                   +--6t7a_C    
                       !     !     +-------------3 
  ----------RA--     -11     +-----6             +--7xsx_a    
                       !           ! 
  ----------RG--       !           +----------------7e9c_G    
                       !  
  --LT--------RG       !                           +8eue_E    
                       !       +-------------------2 
  ----------RG--       !       !                   ! +7k6p_A    
                       +-------8                   +-1 
  --LT------RC--               !                     +5xm1_A    
                               ! 
  ----------RT--               +--------------------7wlr_E

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updated Wed Dec 20 02:03:41 2023