8com_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_H interface=3, rqRkrtwnvyvsrslrsinsqmsmtsrtmkivnsfvndlferiaaeaativrvnrkrtlgarelqtavrlvlpadlakhamaegtkavshass

  
  ----------RA--       +-----------------------------6g0l_D    
                       !  
  RT------------       !                       +-----9fgq_D    
                       !        +--------------6 
  --------RA----     -13        !              !     +1zla_C    
                       !        !              +-----5 
  --------RG----       !        !                    +8ox0_C    
                       !        !  
  --RAAANA------       !        !         +-------------1jfi_B    
                       +-------12     +---7 
  ----LC--RT----                !     !   +-------------8hr1_E    
                                !  +--9 
  --------RA----                !  !  !                 +7xsx_a    
                                !  !  +-----------------4 
  --------RT----                !  !                    +8grq_A    
                                +-11  
  --------RT----                   !                     +8u14_G    
                                   !  +------------------2 
  --------RG----                   !  !                  +5x0y_G    
                                   !  !  
  --------RG----                   +-10                  +7e9c_G    
                                      !   +--------------1 
  --------RG----                      !   !              +8jla_C    
                                      +---8 
  --------RA--RA                          !              +6a5l_g    
                                          +--------------3 
  --------RG----                                         +8txv_G

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updated Sun Aug 3 23:44:58 2025