Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8com_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----------RA--          +-----------------------------6g0l_D    
                          !  
  RT------------          !                       +-----9fgq_D    
                          !                +------6 
  --------RA----          !                !      !     +1zla_C    
                          !     +----------8      +-----4 
  --------RG----       +-12     !          !            +8ox0_C    
                       !  !     !          ! 
  --------RG----       !  !     !          +------------8jla_C    
                       !  !     !  
  --------RG----       !  !     !                         +7e9c_G    
                       !  !     !                       +-1 
  --------RT----       !  +----11             +---------2 +8u14_G    
                       !        !             !         ! 
  --------RG----       !        !  +----------7         +5x0y_G    
                       !        !  !          ! 
  --------RG----     -13        !  !          !         +8txv_G    
                       !        !  !          +---------5 
  --------RA--RA       !        +-10                    +6a5l_g    
                       !           !  
  --------RA----       !           !                    +7xsx_a    
                       !           !     +--------------3 
  --------RT----       !           +-----9              +8grq_A    
                       !                 ! 
  ----LC--RT----       !                 +--------------8hr1_E    
                       !  
  --RAAANA------       +-----------------------------1jfi_B    
                     

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updated Wed Dec 18 16:42:09 2024