8com_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8com_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8com_H interface=3, rqRkrtwnvyvsrslrsinsqmsmtsrtmkivnsfvndlferiaaeaativrvnrkrtlgarelqtavrlvlpadlakhamaegtkavshass

  
  RG----------          +--------------------------7ccr_H    
                        !  
  --RAAANA----          !               +-----------1jfi_B    
                        !            +--7 
  --------RA--          !            !  +-----------7e9c_F    
                        !          +-8 
  --------RA--          !          ! !              +7xsx_a    
                        !          ! +--------------2 
  --------RC--       +-11          !                +7ux9_E    
                     !  !          ! 
  --------RG--       !  !        +-9                  +7e9c_G    
                     !  !        ! !                +-1 
  --------RT--       !  !        ! !         +------3 +8u14_G    
                     !  !        ! !         !      ! 
  --------RG--       !  !        ! !         !      +8upf_G    
                     !  !        ! +---------6 
  --------RG--     -12  +-------10           !     +8txv_G    
                     !           !           +-----5 
  --------RARA       !           !                 ! +6a5l_g    
                     !           !                 +-4 
  ------HGRG--       !           !                   +8rbx_V    
                     !           !  
  --------RT--       !           +-----------------6px1_A    
                     !  
  --------RC--       +----------------------------7yqk_C

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updated Sat Jan 10 22:55:15 2026