8d96_BC : 3D-footprint complex

structure name	HUMAN DNA POLYMERASE ALPHA/PRIMASE ELONGATION COMPLEX I BOUND TO PRIMER/TEMPLATE
experiment	NMR
structural superfamily	PriB N-terminal domain-like;Ribonuclease H-like;DNA/RNA polymerases;Zinc finger domain of DNA polymerase-alpha;
reference complex	8d0k_E 8d0k_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8d96_B interface=34,38,78,79,82,83,91,92,93,94,174,176, kisldqidllstksfppcmrqlhkalrenhhlrHggrMqyglflkgigltleqalqfwkqefikgkmdpdkfdkgysYNirHSfgkegkrTDYTpfsclkiilsnppsqgdyhgcpfrhsdpellkqklqsykispggisqildlvkgthyqvacqkyfemihnvddcgfslnHpNqffcesqriln > 8d96_C interface=569,573,575,580,582,671,699, eqvfhfywldayedqynqpgvvflfgkvwiesaethvsccvmvkniertlyflpremkidlntgketgtpismkdvyeefdekiatkykimkfkskpveknyafeipdvpekseylevkysaempqlpqdlkgetfshvfgtntsslelflmnrkikgpcwlevkspqllnqpvswckveamalkpdlvnvikdvsppplvvmafsmktmqnaknhqneiiamaalvhhsfaldkaapkppfqshfcvvskpkdcifpyafkeviekknvkvevaatertllgfflakvhkidpdiivghniygfelevllqrinvckaphwskigrlkrsnmpklgfgernatcgrmicdveisakelircksyhlselvqqilktervvipmeniqnmysessqllyllehtwkdakfilqimcelnvlplalqitniagnimsrtlmggrserneflllhafyennyivpdkqiaayagglvldpkvgfydkfillldfnslypsiiqefnicfttvqrveqipelpdpslemgilpreirklverrkqvkqlmkqqdlnpdlilqydirqkalkLtanSmYgclgFsYsrfyakplaalvtykgreilmhtkemvqkmnleviygdtdsimintnstnleevfklgnkvksevnklyklleididgvfksllllkkKkyaalvveptsdgnyvtkqelkgldivRrdwcdlakdtgnfvigqilsdqsrdtiveniqkrlieigenvlngsvpvsqfeinkaltkdpqdypdkkslphvhvalwinsqggrkvkagdtvsyvicqdgsnltasqrayapeqlqkqdnltidtqyylaqqihpvvaricepidgidavliatwlgldptqfrvhhy
interface signature	HMYNHSTDYTHN/LSYFYKR

Estimated binding specificities ?

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# IC=12.742 IC/col=0.708 n_of_columns=18

specificity:

A |  96   0   6   6   6  24   6  24  24  24  24  24   0   0  96  96   6  96
C |   0   0   6   6   6  24   6  24  24  24  24  24  96  96   0   0   6   0
G |   0   0  78  78   6  24  78  24  24  24  24  24   0   0   0   0   6   0
T |   0  96   6   6  78  24   6  24  24  24  24  24   0   0   0   0  78   0

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updated Wed Sep 11 21:55:34 2024