8d9d_BC : 3D-footprint complex

structure name	HUMAN DNA POLYMERASE-ALPHA/PRIMASE ELONGATION COMPLEX II BOUND TO PRIMER/TEMPLATE
experiment	NMR
structural superfamily	Ribonuclease H-like;DNA/RNA polymerases;Zinc finger domain of DNA polymerase-alpha;PriB N-terminal domain-like;
reference complex	8d0b_F 8d0k_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8d9d_B interface=269,273,313,314,317,326,328,329,330,409,411, yphclqfylqppsenisliefenlaidrvkllksvenlgvsyvkgteqyqskleselrklkfsyrenledeyeprrrdhishfilrlaycqseelrrwfiqqemdllrfrfsilpkdkiqdflkdsqlqfeaisdeektlreqeivasspslsglklgfesiykipfadaldlfrgrkvyledgfayvplkdivaiilnefraklskalaltarslpavqsderlqpllnhlshskisldqidllstksfppcmrqlhkalrenhhlrHggrMqyglflkgigltleqalqfwkqefikgkmdpdkfdkgysYNirHsfgkegkrTdYTPfsclkiilsnppsqgdyhgcpfrhsdpellkqklqsykispggisqildlvkgthyqvacqkyfemihnvddcgfslnHpNqffcesqriln > 8d9d_C interface=573,575,580,582,671,699, eqvfhfywldayedqynqpgvvflfgkvwiesaethvsccvmvkniertlyflpremkidlntgketgtpismkdvyeefdekiatkykimkfkskpveknyafeipdvpekseylevkysaempqlpqdlkgetfshvfgtntsslelflmnrkikgpcwlevkspqllnqpvswckveamalkpdlvnvikdvsppplvvmafsmktmqnaknhqneiiamaalvhhsfaldkaapkppfqshfcvvskpkdcifpyafkeviekknvkvevaatertllgfflakvhkidpdiivghniygfelevllqrinvckaphwskigrlkrsnmpklgfgernatcgrmicdveisakelircksyhlselvqqilktervvipmeniqnmysessqllyllehtwkdakfilqimcelnvlplalqitniagnimsrtlmggrserneflllhafyennyivpdkqiaayagglvldpkvgfydkfillldfnslypsiiqefnicfttvqrveqipelpdpslemgilpreirklverrkqvkqlmkqqdlnpdlilqydirqkalkltanSmYgclgFsYsrfyakplaalvtykgreilmhtkemvqkmnleviygdtdsimintnstnleevfklgnkvksevnklyklleididgvfksllllkkKkyaalvveptsdgnyvtkqelkgldivRrdwcdlakdtgnfvigqilsdqsrdtiveniqkrlieigenvlngsvpvsqfeinkaltkdpqdypdkkslphvhvalwinsqggrkvkagdtvsyvicqdgsnltasqrayapeqlqkqdnltidtqyylaqqihpvvaricepidgidavliatwlgldptqfrvhhytdeekyrdcerfkcpcptcgteniydnvfdgsgtdmepslyrcsnidckaspltftvqlsnklimdirrfikkyydgwliceeptcrnrtrhlplqfsrtgplcpacmkatlqpeysdkslytqlcfyryifdaecaleklttdhekdklkkqfftpkvlqdyrklkntaeqflsrsgysevnlsklfa
interface signature	HMYNHTYTPHN/SYFYKR

Estimated binding specificities ?

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# IC=10.630 IC/col=0.591 n_of_columns=18

specificity:

A |  96   0  24   9   9  24  11  24  24  24  24  24   0   0  96  96  24  96
C |   0   0  24  11   9  24   9  24  24  24  24  24  96  96   0   0  24   0
G |   0   0  24  67  11  24  67  24  24  24  24  24   0   0   0   0  24   0
T |   0  96  24   9  67  24   9  24  24  24  24  24   0   0   0   0  24   0

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updated Wed Jan 7 20:40:19 2026