8d9d_BC : 3D-footprint complex

structure name	HUMAN DNA POLYMERASE-ALPHA/PRIMASE ELONGATION COMPLEX II BOUND TO PRIMER/TEMPLATE
experiment	NMR
structural superfamily	PriB N-terminal domain-like;Ribonuclease H-like;DNA/RNA polymerases;Zinc finger domain of DNA polymerase-alpha;
reference complex	8d0k_E 8d0k_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8d9d_B interface=269,273,313,314,317,326,328,329,330,409,411, yphclqfylqppsenisliefenlaidrvkllksvenlgvsyvkgteqyqskleselrklkfsyrenledeyeprrrdhishfilrlaycqseelrrwfiqqemdllrfrfsilpkdkiqdflkdsqlqfeaisdeektlreqeivasspslsglklgfesiykipfadaldlfrgrkvyledgfayvplkdivaiilnefraklskalaltarslpavqsderlqpllnhlshskisldqidllstksfppcmrqlhkalrenhhlrHggrMqyglflkgigltleqalqfwkqefikgkmdpdkfdkgysYNirHsfgkegkrTdYTPfsclkiilsnppsqgdyhgcpfrhsdpellkqklqsykispggisqildlvkgthyqvacqkyfemihnvddcgfslnHpNqffcesqriln > 8d9d_C interface=573,575,580,582,671,699, eqvfhfywldayedqynqpgvvflfgkvwiesaethvsccvmvkniertlyflpremkidlntgketgtpismkdvyeefdekiatkykimkfkskpveknyafeipdvpekseylevkysaempqlpqdlkgetfshvfgtntsslelflmnrkikgpcwlevkspqllnqpvswckveamalkpdlvnvikdvsppplvvmafsmktmqnaknhqneiiamaalvhhsfaldkaapkppfqshfcvvskpkdcifpyafkeviekknvkvevaatertllgfflakvhkidpdiivghniygfelevllqrinvckaphwskigrlkrsnmpklgfgernatcgrmicdveisakelircksyhlselvqqilktervvipmeniqnmysessqllyllehtwkdakfilqimcelnvlplalqitniagnimsrtlmggrserneflllhafyennyivpdkqiaayagglvldpkvgfydkfillldfnslypsiiqefnicfttvqrveqipelpdpslemgilpreirklverrkqvkqlmkqqdlnpdlilqydirqkalkltanSmYgclgFsYsrfyakplaalvtykgreilmhtkemvqkmnleviygdtdsimintnstnleevfklgnkvksevnklyklleididgvfksllllkkKkyaalvveptsdgnyvtkqelkgldivRrdwcdlakdtgnfvigqilsdqsrdtiveniqkrlieigenvlngsvpvsqfeinkaltkdpqdypdkkslphvhvalwinsqggrkvkagdtvsyvicqdgsnltasqrayapeqlqkqdnltidtqyylaqqihpvvaricepidgidavliatwlgldptqfrvhhytdeekyrdcerfkcpcptcgteniydnvfdgsgtdmepslyrcsnidckaspltftvqlsnklimdirrfikkyydgwliceeptcrnrtrhlplqfsrtgplcpacmkatlqpeysdkslytqlcfyryifdaecaleklttdhekdklkkqfftpkvlqdyrklkntaeqflsrsgysevnlsklfa
interface signature	HMYNHTYTPHN/SYFYKR

Estimated binding specificities ?

contact

# IC=10.709 IC/col=0.595 n_of_columns=18

specificity:

A |  96   0  24  11   9  24   9  24  24  24  24  24   0   0  96  96  24  96
C |   0   0  24   9   9  24   9  24  24  24  24  24  96  96   0   0  24   0
G |   0   0  24  67   9  24  69  24  24  24  24  24   0   0   0   0  24   0
T |   0  96  24   9  69  24   9  24  24  24  24  24   0   0   0   0  24   0

scan!

home
updated Fri Aug 1 05:58:16 2025