8dlf_ABCD : 3D-footprint complex

Interface of input file ?

structure name	EBNA1 DNA BINDING DOMAIN (DBD) (458-617)+2 REPEATS OF FAMILY REPEAT (FR) REGION
experiment	NMR
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dlf_A interface=2,3,4,7,8,12,20,58,61,62, rRKKggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggskTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppmvega > 8dlf_B interface=6,7,11,19,20,57,60,61,64, rkkggWFgkhRgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggskTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppmve > 8dlf_C interface=3,7,8,12,20,21,57,58,61,62,65, rrKkggWFgkhRgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppmv > 8dlf_D interface=1,4,9,17,54,55,58,59, KggWfgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlppwfppmvega
interface signature	RKKWFRKTYN/WFRKFTYNR/KWFRKFKTYNR/KWRKKTYN

Estimated binding specificities ?

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# IC=29.136 IC/col=0.633 n_of_columns=46

specificity:

A |   5  26   0  94   0   1   0  24  24  24   7   1   0  96   5   0  85  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0  96   0   9  24  24  96   1  24   1   1  96   0   6
C |   4   0   0   0   0  88  96  24  24  24   7  88   0   0  82  96   9  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  71  24  24   0   1  24  86   4   0  96  86
G |  86  70   0   1  96   3   0  24  24  24  74   3   0   0   1   0   1  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96   7  24  24   0   4  24   8   1   0   0   1
T |   1   0  96   1   0   4   0  24  24  24   8   4  96   0   8   0   1  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0   9  24  24   0  90  24   1  90   0   0   3

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updated Wed Sep 11 22:07:33 2024