8dq1_CD : 3D-footprint complex

structure name	QUORUM-SENSING RECEPTOR RHLR BOUND TO PQSE
experiment	NMR
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	8dq1_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dq1_C interface=210,211,213,214,215,217, mrndggfllwwdglrsemqpihdsqgvfavlekevrrlgfdyyaygvrhtipftrpktevhgtypkawleryqmqnygavdpailnglrssemvvwsdslfdqsrmlwneardwglcvgatlpirapnnllsvlsvardqqnissfereeirlrlrcmielltqkltdlehpmlmsnpvclshrereilqwtadgkssgeiaiilsiseSTvNFHhKniqkkfdapnktlaaayaaalgli > 8dq1_D interface=207,210,211,214, dggfllwwdglrsemqpihdsqgvfavlekevrrlgfdyyaygvrhtipftrpktevhgtypkawleryqmqnygavdpailnglrssemvvwsdslfdqsrmlwneardwglcvgatlpirapnnllsvlsvardqqnissfereeirlrlrcmielltqkltdlehpmlmsnpvclshrereilqwtadgkssgeiaiilsiseStvNFhhKniqkkfdapnktlaaayaaalgli
interface signature	STNFHK/SNFK

Estimated binding specificities ?

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# IC=6.080 IC/col=0.405 n_of_columns=15

specificity:

A |   6  24   0  24   6  24  24  24  24  24  24   6  78   6  96
C |  78  24   0  24  78  24  24  24  24  24  24  78   6  78   0
G |   6  24   0  24   6  24  24  24  24  24  24   6   6   6   0
T |   6  24  96  24   6  24  24  24  24  24  24   6   6   6   0

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updated Sun Dec 17 20:45:05 2023