8dq1_CD : 3D-footprint complex

structure name	QUORUM-SENSING RECEPTOR RHLR BOUND TO PQSE
experiment	NMR
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	8dq1_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dq1_C interface=210,211,213,214,215,217, mrndggfllwwdglrsemqpihdsqgvfavlekevrrlgfdyyaygvrhtipftrpktevhgtypkawleryqmqnygavdpailnglrssemvvwsdslfdqsrmlwneardwglcvgatlpirapnnllsvlsvardqqnissfereeirlrlrcmielltqkltdlehpmlmsnpvclshrereilqwtadgkssgeiaiilsiseSTvNFHhKniqkkfdapnktlaaayaaalgli > 8dq1_D interface=207,210,211,214, dggfllwwdglrsemqpihdsqgvfavlekevrrlgfdyyaygvrhtipftrpktevhgtypkawleryqmqnygavdpailnglrssemvvwsdslfdqsrmlwneardwglcvgatlpirapnnllsvlsvardqqnissfereeirlrlrcmielltqkltdlehpmlmsnpvclshrereilqwtadgkssgeiaiilsiseStvNFhhKniqkkfdapnktlaaayaaalgli
interface signature	STNFHK/SNFK

Estimated binding specificities ?

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# IC=8.832 IC/col=0.589 n_of_columns=15

specificity:

A |   0   0   0   0  24  24  24  24  24  24   1  18  96   4   0
C |   0   1   5   1  24  24  24  24  24  24   0  41   0  20   0
G |   0  91   0  91  24  24  24  24  24  24  91  24   0  50   0
T |  96   4  91   4  24  24  24  24  24  24   4  13   0  22  96

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updated Sun Dec 15 23:35:07 2024