8dq1_CD : 3D-footprint complex

structure name	QUORUM-SENSING RECEPTOR RHLR BOUND TO PQSE
experiment	NMR
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	8dq1_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dq1_C interface=210,211,213,214,215,217, mrndggfllwwdglrsemqpihdsqgvfavlekevrrlgfdyyaygvrhtipftrpktevhgtypkawleryqmqnygavdpailnglrssemvvwsdslfdqsrmlwneardwglcvgatlpirapnnllsvlsvardqqnissfereeirlrlrcmielltqkltdlehpmlmsnpvclshrereilqwtadgkssgeiaiilsiseSTvNFHhKniqkkfdapnktlaaayaaalgli > 8dq1_D interface=207,210,211,214, dggfllwwdglrsemqpihdsqgvfavlekevrrlgfdyyaygvrhtipftrpktevhgtypkawleryqmqnygavdpailnglrssemvvwsdslfdqsrmlwneardwglcvgatlpirapnnllsvlsvardqqnissfereeirlrlrcmielltqkltdlehpmlmsnpvclshrereilqwtadgkssgeiaiilsiseStvNFhhKniqkkfdapnktlaaayaaalgli
interface signature	STNFHK/SNFK

Estimated binding specificities ?

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# IC=8.299 IC/col=0.553 n_of_columns=15

specificity:

A |   0   3   3   4  24  24  24  24  24  24   0  11  96  17   3
C |   0   3   4   3  24  24  24  24  24  24   0  57   0   3   3
G |   0  87   3  86  24  24  24  24  24  24  93  12   0  64   3
T |  96   3  86   3  24  24  24  24  24  24   3  16   0  12  87

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updated Wed Sep 11 22:08:29 2024