8e2l_ABCDEF : 3D-footprint complex

structure name	STRUCTURE OF LATES CALCARIFER TWINKLE HELICASE WITH ATP AND DNA
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	8e2l_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8e2l_A interface=360, pedeaqliktmfqitkvsnatlkkfgvrlfkptkslvfpwfagpdsslkglkllsaqntdtekvtyneatvpkissyynlfgltlvgrmdsevvltgheldtlavsqatglpsvalprgvsclppmllpyleqfkrvtlwlghdirsweaskifsrklglrrcslvrpgedrpcplealargknlsriiktsipaahksivsfkqlredvygellnteqvagvkwtrfpelnrilkghrkgeltvftgptgsgkttfisevaldlciqgvntlwgsfqinnvrlakimltqfamqrleenleqydfwadkfeelplyfmtfhgqqniktvldtmqhavylydinhviidnlqfmmgqdkYavqdhiigafrkfatntschvtliihprkeeddrelqtasifgsakasqeadnvlilqekklvtcpgrrslqvtknrfdgdvgifpldfikssltfsapi > 8e2l_B interface=361, pedeaqliktmfqitkvsnatlkkfgvrlfkptkslvfpwfagpdsslkglkllsaqntdtekvtyneatvpkissyynlfgltlvgrmdsevvltgheldtlavsqatglpsvalprgvsclppmllpyleqfkrvtlwlghdirsweaskifsrklglrrcslvrpgedrpcplealargknlsriiktsipaahksivsfkqlredvygellnteqvagvkwtrfpelnrilkghrkgeltvftgptgsgkttfisevaldlciqgvntlwgsfqinnvrlakimltqfamqrleenleqydfwadkfeelplyfmtfhgqqniktvldtmqhavylydinhviidnlqfmmgqidkYavqdhiigafrkfatntschvtliihprkeeddrelqtasifgsakasqeadnvlilqekklvtcpgrrslqvtknrfdgdvgifpldfikssltfsapi > 8e2l_C interface=361, pedeaqliktmfqitkvsnatlkkfgvrlfkptkslvfpwfagpdsslkglkllsaqntdtekvtyneatvpkissyynlfgltlvgrmdsevvltgheldtlavsqatglpsvalprgvsclppmllpyleqfkrvtlwlghdirsweaskifsrklglrrcslvrpgedrpcplealargknlsriiktsipaahksivsfkqlredvygellnteqvagvkwtrfpelnrilkghrkgeltvftgptgsgkttfisevaldlciqgvntlwgsfqinnvrlakimltqfamqrleenleqydfwadkfeelplyfmtfhgqqniktvldtmqhavylydinhviidnlqfmmgqidkYavqdhiigafrkfatntschvtliihprkeeddrelqtasifgsakasqeadnvlilqekklvtcpgrrslqvtknrfdgdvgifpldfikssltfsapi > 8e2l_D interface=361, pedeaqliktmfqitkvsnatlkkfgvrlfkptkslvfpwfagpdsslkglkllsaqntdtekvtyneatvpkissyynlfgltlvgrmdsevvltgheldtlavsqatglpsvalprgvsclppmllpyleqfkrvtlwlghdirsweaskifsrklglrrcslvrpgedrpcplealargknlsriiktsipaahksivsfkqlredvygellnteqvagvkwtrfpelnrilkghrkgeltvftgptgsgkttfisevaldlciqgvntlwgsfqinnvrlakimltqfamqrleenleqydfwadkfeelplyfmtfhgqqniktvldtmqhavylydinhviidnlqfmmgqidkYavqdhiigafrkfatntschvtliihprkeeddrelqtasifgsakasqeadnvlilqekklvtcpgrrslqvtknrfdgdvgifpldfikssltfsapi > 8e2l_E interface=167, aahksivsfkqlredvygellnteqvagvkwtrfpelnrilkghrkgeltvftgptgsgkttfisevaldlciqgvntlwgsfqinnvrlakimltqfamqrleenleqydfwadkfeelplyfmtfhgqqniktvldtmqhavylydinhviidnlqfmmgqidkYavqdhiigafrkfatntschvtliihprkeeddrelqtasifgsakasqeadnvlilqekklvtcpgrrslqvtknrfdgdvgifpldfikssltfsapi > 8e2l_F interface=156, hksivsfkqlredvyggvkwtrfpelnrilkghrkgeltvftgptgsgkttfisevaldlciqgvntlwgsfqinnvrlakimltqfamqrleenleqydfwadkfeelplyfmtfhgqqniktvldtmqhavylydinhviidnlqfmmgqidkYavqdhiigafrkfatntschvtliihprkeeddrelqtasifgsakasqeadnvlilqekklvtcpgrrslqvtknrfdgdvgifpldfikssltfsapi
interface signature	Y/Y/Y/Y/Y/Y

Estimated binding specificities ?

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# IC=9.151 IC/col=0.832 n_of_columns=11

specificity:

A |   0   0   0   6   3   9   3   7   3  24   1
C |   0   0   0   3  15   3  11  15   5  24   3
G |   0   0   0   3   3  19   6  13   0  24   0
T |  96  96  96  84  75  65  76  61  88  24  92

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updated Sun Dec 15 23:59:10 2024