8ebt_ABHK : 3D-footprint complex

structure name	XPA REPOSITIONING CORE7 OF TFIIH RELATIVE TO XPC-DNA LESION (CY5)
experiment	NMR
structural superfamily	Putative DNA-binding domain;Glucocorticoid receptor-like DNA-binding domain;
reference complex	8ebt_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ebt_A interface=500,520, kvdeygakdyrlqmplkddhtsrplwvapdghifleafspvykyaqdflvaiaepvcrpthvheykltayslyaavsvglqtsditeylrklsktgvpdgimqfiklctvsygkvklvlkhnryfveschpdviqhllqdpvirecrlrnsegeatetvsfevkqemieelqkrcihleypllaeydfrndsvnpdinidlkptavlrpyqekslrkmfgngrarsgvivlpcgagkslvgvtaactvrkrclvlgnsavsveqwkaqfkmwstiddsqicrftsdakdkpigcsvaistysmlghttkrsweaervmewlktqewglmildevhtipakmfrrvltivqahcklgltatlvreddkivdlnfligpklyeanwmelqnngyiakvqcaevwcpmspefyreyvaiktkkrillytmnpnkfracqflikfherrndkiivfadnvfalkeyairlnkpyiygptsqgermqilqnfkhnpkintifisKvgdtsfdlpeanvliqissHggsrrqeaqrlgrvlrynaffyslvsqdtqemaystkrqrflvdqgysfkvitklagmeeedlafstkeeqqqllqkvlaatd > 8ebt_B interface=454,456, mklnvdgllvyfpydyiypeqfsymrelkrtldakghgvlempsgtgktvsllalimayqrayplevtkliycsrtvpeiekvieelrkllnfyekqegeklpflglalssrknlcihpevtplrfgkdvdgkchsltasyvraqyqhdtslphcrfyeefdahgrevplpagiynlddlkalgrrqgwcpyflarysilhanvvvysyhylldpkiadlvskelarkavvvfdeahnidnvcidsmsvnltrrtldrcqgnletlqktvlraehflgflrrlleyvkwrlrvqhvvqesppaflsglaqrvciqrkplrfcaerlrsllhtleitdladfspltllanfatlvstyakgftiiiepfddrtptianpilhfscmdaslaikpvferfqsviitsgtlspldiypkildfhpvtmatftmtlarvclcpmiigrgndqvaissKfEtrediavirnygnlllemsavvpdgivafftsyqymestvaswyeqgileniqrnkllfietqdgaetsvalekyqeacengrgaillsvargkvsegidfvhhygravimfgvpyvytqsrilkarleylrdqfqirendfltfdamrhaaqcvgrairgktdyglmvfadkrfargdkrgklprwiqehltdanlnltvdegvqvakyflrqmaqpfhr > 8ebt_H interface=122,163,164,166,171,172, ptaiglyknhplyalkrhllkyeaiypetaailgycrgeavysrdcvhtlhsrdtwlkkarvvrlgevpykmvkgfsnrarkarlaepqlreendlglfgywqteeyqppvavdgkvprneFgnvylflpsmmpigcvqlnlpnlhrvarkldidcvqaitgFDfHggysHPvtdgyivceefkdvlltaweneqavierkekekkekralgnwkllakgllirerlkrryggtssqaeaarilaaswpqnredeekqkekkaaashlfpfekl > 8ebt_K interface=41,71,73,74, yviceecgkefmdsylmnhfdlptcdncrdaddkhklitkTeakqeyllkdcdlekrepplkfivkknphHsQWgdmklylklqivkrslevwgsqealeeakevrqenrekmkqkkfdkkvkelrravrssvwkretivhqheygpeenleddmyrktctmcgheltyekm
interface signature	KH/KE/FFDHHP/THQW

Estimated binding specificities ?

contact

# IC=6.205 IC/col=0.295 n_of_columns=21

specificity:

A |  38  20  24  24  24  24  24  24  24  24  24  24  22   0   0   4  31  24  24  96   0
C |  19  36  24  24  24  24  24  24  24  24  24  24  22  96   0   7  21  24  24   0   0
G |  20  20  24  24  24  24  24  24  24  24  24  24  27   0   0  81  21  24  24   0   0
T |  19  20  24  24  24  24  24  24  24  24  24  24  25   0  96   4  23  24  24   0  96

scan!

home
updated Wed Sep 11 22:56:46 2024